Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4142g00015 ATGGAGTCAACACCCATACACTGGGCCCACCTGTTGTTGCTAGTCTTACTCTTCAGCCTCCGCCACCGTTGCTCCCATGCACAGCCCACCGGCGCATCGTCCGCCTGGGTCGGCTCAGTCTTAAAAGAATCTTTGAGCAAATCTCACTTCAATATTATTATTGTTGCCTTCCTCGGTGCCATTGTCTTCTTTATTTTCTTCTCCCTCTTGGTTCGTCACTGTGTCGATTCCTGTGCCAGCAGTGATGCTCAGAGTGCCGCGGCAGCCGCAGAGCAGCGCCGCCGTGAAGTCATCGAGAGATGCCCTGTCCTCGTCTACTCCGAGGTGAGGGATCTCAGGATCGGGAATTCAGCTCTGGAATGTGCCGTTTGCCTGAGCGAGTTCGAGGACGCGGACAAGATCCGCTTGCTGCCAAAATGCAATCACGTTTTCCATCCCGATTGTATCGATAGGTGGTTCGCCTCACGTCTCACTTGCCCTGTTTGCCGCGCCAAGCTCTCTCCCTCGGATTTCGCCGAGAATGAGGAGGCCGACGCCGTGACGGAGTCGAATCCCGATGAATCACCGGCTGATGCAGATGCTGAAATCGAGGAACAAAGCACCGTGGAGTCGTCGGAGCCAATGGCGGAGACGATTGACGTGGGTGAAGAAAGCGGAAGCACTGGTCTGATTCCGGGGACAACAACGGCGTCGGAAAGATTTGAGAGGTCACACTCAACGGGTCACTCTCTCACCATGGCACGCGAGGGGATGATGATGACTGAGAGGTATACACTGAGATTACCGGAGAATGTGAAGGAGGAGATATTTGGGAACCAGAGGAGAAGGCTTCGACGTTGCGCTAGCAGCAACGACGTCGTTTTGCAGGGAGAATGGAGCACGAAGGAAGGAAGCGATGATATGGAGAAATCGGCGTTGACGATCTCCACGACGCCGCCATTTGTTTCGAAGGATTGGAGCTCTGTGAAATTCCTGAAGCAGAATGCTACTGATCAGAGTTCGCCGTCGACGTCGCGAAGGCCTCCGGTTTGA 1032 0.5446 MESTPIHWAHLLLLVLLFSLRHRCSHAQPTGASSAWVGSVLKESLSKSHFNIIIVAFLGAIVFFIFFSLLVRHCVDSCASSDAQSAAAAAEQRRREVIERCPVLVYSEVRDLRIGNSALECAVCLSEFEDADKIRLLPKCNHVFHPDCIDRWFASRLTCPVCRAKLSPSDFAENEEADAVTESNPDESPADADAEIEEQSTVESSEPMAETIDVGEESGSTGLIPGTTTASERFERSHSTGHSLTMAREGMMMTERYTLRLPENVKEEIFGNQRRRLRRCASSNDVVLQGEWSTKEGSDDMEKSALTISTTPPFVSKDWSSVKFLKQNATDQSSPSTSRRPPV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4142g00015 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 169 IPR013083 -
Pral4142g00015 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 43 302 - -
Pral4142g00015 343 MobiDBLite consensus disorder prediction 221 244 - -
Pral4142g00015 343 SUPERFAMILY RING/U-box 120 169 - -
Pral4142g00015 343 CDD RING-H2_EL5-like 120 163 - -
Pral4142g00015 343 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Pral4142g00015 343 FunFam E3 ubiquitin-protein ligase ATL6 81 169 - -
Pral4142g00015 343 Pfam Ring finger domain 120 163 IPR001841 -
Pral4142g00015 343 MobiDBLite consensus disorder prediction 175 200 - -
Pral4142g00015 343 SMART ring_2 121 162 IPR001841 -
Pral4142g00015 343 MobiDBLite consensus disorder prediction 172 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4142g00015 Pral-Chr4142 118337 119368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4142g00015 11 270 Rapid Response to Elicitors AT3G05200 36.131 7.58e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4142g00015 K10664 - tcc:18611494 184.882