Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4138g00032 ATGTTAGATCAGCATGCTATGGAATATTCTCATTTCCCAGAAGTTGCAGAAGCAGAGGCGTATAGCAGCACAGCTCCGTCAGGAGGAGGAGTCACGAGGAAGAGGAAGGGCAACAAAATCCAGAGAAGGTTCAGTGATGACCAGATCAGATCACTGGAATCCATGTTCGAGACAGAGTCCAGGCTTGAGCCGAGGAAGAAAGTGCAGCTGGCAAGGGAGCTTGGGTTGCAGCCGAGGCAGGTTGCTATTTGGTTCCAGAACAAGAGGGCAAGATGGAAGTCCAAGCAGATTGAAAGAGACTACAGCATACTCAGAGCTAATTATACCAGCTTGGCTTCAAGGTTCGAAGCTCTGAAGAAGGAGAAGGAGGCATTGCTAATTCAGTTGCAGAAGCTGAATGATCTAATACAGAGGCCAAACGACCAAGCTCAGGGCCGTACACAAGTCAAACCGGCAAACAGTATGGACAGTGTATCAGAAAATGGAGACACCGTTAGAGTGAAACCTGAGGAAAATCCAAGCTCAACAATGGAGCGATCAGAGAACGTGCTAGGTGTTCTCTCAGATGATGACAGCAGTATAAAAGCCGAATACTTTGGCCTTGAAGATGAGCCTACTCTTCTGAATTTTGTGGAGCAAGCAGATGATTCCCTGACTTCAGCAGAACATTGGCGTACTTTTGATTCTGATGAACTCTTAGACCAGTCTGCTGTCGGTTACCAGTGGTGGGACTTCTGGTCCTGA 744 0.4758 MLDQHAMEYSHFPEVAEAEAYSSTAPSGGGVTRKRKGNKIQRRFSDDQIRSLESMFETESRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQIERDYSILRANYTSLASRFEALKKEKEALLIQLQKLNDLIQRPNDQAQGRTQVKPANSMDSVSENGDTVRVKPEENPSSTMERSENVLGVLSDDDSSIKAEYFGLEDEPTLLNFVEQADDSLTSAEHWRTFDSDELLDQSAVGYQWWDFWS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4138g00032 247 Gene3D - 23 98 - -
Pral4138g00032 247 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677
Pral4138g00032 247 Pfam Homeodomain 42 93 IPR001356 GO:0003677
Pral4138g00032 247 Pfam Homeobox associated leucine zipper 95 136 IPR003106 GO:0006355|GO:0043565
Pral4138g00032 247 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 36 176 IPR045224 GO:0003700
Pral4138g00032 247 ProSitePatterns 'Homeobox' domain signature. 70 93 IPR017970 GO:0000981|GO:0006355
Pral4138g00032 247 SUPERFAMILY Homeodomain-like 23 96 IPR009057 -
Pral4138g00032 247 PRINTS Lambda-repressor HTH signature 75 91 IPR000047 GO:0003677
Pral4138g00032 247 PRINTS Lambda-repressor HTH signature 66 75 IPR000047 GO:0003677
Pral4138g00032 247 FunFam Homeobox-leucine zipper protein ATHB-7 23 95 - -
Pral4138g00032 247 Coils Coil 115 135 - -
Pral4138g00032 247 MobiDBLite consensus disorder prediction 138 180 - -
Pral4138g00032 247 MobiDBLite consensus disorder prediction 20 44 - -
Pral4138g00032 247 SMART HOX_1 38 99 IPR001356 GO:0003677
Pral4138g00032 247 CDD homeodomain 39 96 IPR001356 GO:0003677
Pral4138g00032 247 MobiDBLite consensus disorder prediction 138 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4138g00032 Pral-Chr4138 257223 258723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4138g00032 41 247 Homeobox Transcription Factor Family AT2G46680 55.310 6.89e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral4138g00032 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4138g00032 K09338 - qsa:O6P43_027419 331.257