Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4138g00029 ATGGACGACCTCCTCTTGTCCCCTTCTTCCCCTTCCTCCCTCCTCTCCTTCTCTCATTCTCCCCCTCCTCCCCCTCCGTCCTCCCCCCCTCTTCAAAACAAGCTTCAATTCTTGCTTCAGGCCCAGCCCCGCTCCTGGCTCTACGCCATTTTCTGGCAGACCTCCCACGACGACCGCGGCCGCCCCCGCTTGTCCTGGGCCCACGGTCACTTCCATGGCTCTGATCATCGTCCCCGTCATAACAACTTCATCAAGGGTCTTGAATCTCTCGTCGACGACAACCTCAACGACGCCGAGTGGTTCTACGTCATGTCCCTCACTCGCACTTTCTCCCTCGCTCCTGATTCCTCCTCCTCCTCCCTCCCTGCCAAGGCTTTTTCCTCTGCTTCTTCTCTTTGGTTGAATATCACCCCCCACGAGCTTCAGTTCCACAACTGTGACAGGGCCAAAGAAGCTTCCCTGCATGGGGTTCGGACCCTGATCTGTGTTCCCGTCGTTCACGGAGTTCTCGAGATGGGTTCCTCTGAAATCATCCCAAAGAACTCGAGTCTCATCCAGCAAGTTAAGTCTCTGTACGGCTCGTCGGATCTCGCCCCCATCATCTCACCATCTATCAAGCAGCAGCCCGAACAAGTCGATTTCTTGGACGTTGACGAGACCATTTCTTTTGCCGACATTGGCATTATCGCCGGCGCGCCAGAAGCAGAAGATAAGAAGGTACCGGTCAATTCCTGCAGTAAACCCCGAAAGAAGGATCCCCGTCTCCAGCTCAGGTCGTACGTGGATTCAGAGCAGTCCCATTCGGATTCCGACGGCCCGATAATAGAGAAAGCACCGCCCAAGAAGAGAGGGAGAAAGCCCGGGCTGGGTCGCGAAACGCCGTTGAACCACGTGGAAGCCGAGCGGCAGCGGCGGGAGAAGCTGAACCACCGGTTCTACGCGCTGCGCGCCGTGGTCCCGCACGTGACGAGGATGGACAAGGCCTCTCTGTTATCAGACGCCGTCTCTTACATCAACGAGCTCAAAGGCAAGATCGAGAAACTGGAGTCGCAGCTTCAGAGGGAGCCCGCCAGCATGAATAGCTGCAGGAAGGTGAAGCTCGAAACGGCGGACACGGTGGAGTCGACGGTGGAGCAGGCCGGCCCCAGCGGGCGGGGCTTCAGGCTGGGGCTGGGGCTGGGGCTGGGTGGGCTGGAGGTGGATGTCAGGATCATGGGGCCGGACGCGATGGTGAGAGTTCAGTCGGAGAACAGGAACCATCCCGGAGCGAGGCTGATGGATGCGCTGCGAGACTTGGAGCTCAGGGTGCACCACGCGAGCATGTCTTGCGTCAACGAGGTCATGCTTCAAGACGTCGTCGTTAAGATCCCTCAAGGCCTGAGAAACGACGAGGGCCTGATCAAATCTGCTATTCTCAGGAGACTGGATCAGTAG 1434 0.5816 MDDLLLSPSSPSSLLSFSHSPPPPPPSSPPLQNKLQFLLQAQPRSWLYAIFWQTSHDDRGRPRLSWAHGHFHGSDHRPRHNNFIKGLESLVDDNLNDAEWFYVMSLTRTFSLAPDSSSSSLPAKAFSSASSLWLNITPHELQFHNCDRAKEASLHGVRTLICVPVVHGVLEMGSSEIIPKNSSLIQQVKSLYGSSDLAPIISPSIKQQPEQVDFLDVDETISFADIGIIAGAPEAEDKKVPVNSCSKPRKKDPRLQLRSYVDSEQSHSDSDGPIIEKAPPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPHVTRMDKASLLSDAVSYINELKGKIEKLESQLQREPASMNSCRKVKLETADTVESTVEQAGPSGRGFRLGLGLGLGGLEVDVRIMGPDAMVRVQSENRNHPGARLMDALRDLELRVHHASMSCVNEVMLQDVVVKIPQGLRNDEGLIKSAILRRLDQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4138g00029 477 PANTHER MYC 21 474 IPR045084 GO:0003700|GO:0006355
Pral4138g00029 477 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 31 191 IPR025610 -
Pral4138g00029 477 SMART finulus 298 347 IPR011598 GO:0046983
Pral4138g00029 477 Gene3D - 292 366 IPR036638 GO:0046983
Pral4138g00029 477 MobiDBLite consensus disorder prediction 1 16 - -
Pral4138g00029 477 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 341 IPR011598 GO:0046983
Pral4138g00029 477 Coils Coil 331 351 - -
Pral4138g00029 477 MobiDBLite consensus disorder prediction 260 294 - -
Pral4138g00029 477 MobiDBLite consensus disorder prediction 269 294 - -
Pral4138g00029 477 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 360 IPR036638 GO:0046983
Pral4138g00029 477 MobiDBLite consensus disorder prediction 1 30 - -
Pral4138g00029 477 Pfam Helix-loop-helix DNA-binding domain 296 341 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4138g00029 Pral-Chr4138 184685 186451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4138g00029 1 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 31.964 2.68e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4138g00029 bHLH-MYC_N 1.8e-36 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4138g00029 - K13422 pcin:129288951 692.575