Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4138g00022 ATGTCAGAAGGTGCAGAAGTTGATGAGCGTGTGGACTTTGATGAAGAAAACTACATGGAAGAGATGGAAGATGATGTTGAAGAACAAATATATGATGAGGGAGTGGATGGAGGTGGGGATGAAAATGAAGAGAATGTCGAGGAACATGAATATGATGATTCAGTAGCGGAAGCTTGTGAGAAAGACCAATATCCTGAAGTAGATGGAAGTGACATTGTAACTGACTCTGTGGAAAACGAGCAAAAGCCATTTTCGATTGATGAAAATGAGAAGGAGAAACACGAAGAACTTCTTGCACTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATACATGCGAAGATGATTTAAGAGAAATGTGTGAACCAATTGGTGATATTCTTGAGGTTAGACTTATGAAAGATAGAGATACAGGAGATGTTAAGGGCTACGCTTTTGTGGCATTTAAAACGAAAGAGATTGCACAAAGGGCCATTGAAGAGTTACATAACAAGGAATTTAAGGGTAAAACTTTAAGGTGTTCTGTGTCTGAAACAAAACACAGATTGTTTATTGGTAATGTTCCAAAAAACTGGACAGAGGATGAGTTCAGCAAACTCATCATGGGTGTTGGTCCTGGAGTTGAAAATATTGAGCTGATAAAGGACCCCCAAAATGCGAGCAGGAATCGCGGGTTTGCTTTTGTTTTGTATTATAATAATGCCTGTGCTGATTATTCTCGGAAGAAGATGTCAAATGCAAACTTTAAGCTGGATGGTAATACCCCCACTGTCACGTGGGCAGATCCGAAGAATTCACCTGATCATTCAGCTTCCTTACAGGTTAAAGCTCTTTATGTGAAAAACATACCTGAGAATACTACTACTGAACAACTGAAGGAACTGTTCTGTCGACACGGAGAAGTGACGAAAGTGGTCATGCCTCCTGGCAAAGCTGGAGGCAAACGTGACTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAGGCAGTAAAAGAGACAGAAAAATATGAAATAGATGGTCAAGTGTTGGAAGTTGTTCTAGCGAAGCCTCAAGCCGAGAAAAAAACTGATGGAGGTCATGCCTACAGTCCCGGACTTCATCCACATCCTGGGTATGGTGGTTTCTCAGGAAATCTATATGGTTCTGTGCGGCCTGGATATGGCGTTACTGGTGGTTATCAACAACCAGTGATATATGGTAGGGGTCCTATGCCAGCAGGAATGCAGATGGTTCCAATGGTACTACCTGATGGTCGTATCGGCTATGTCCTTCAACAGCCTGGTGCACAGATGTCAGCTCCCCGACCCCACAGGAACAACGGTCGAAGCAGTCAGCCGGGGCGAGGGGGAGGCAGCGGCAATGATGAGGGCAATCGCAGTAGAAGGTATCGACCTTATTAA 1422 0.4353 MSEGAEVDERVDFDEENYMEEMEDDVEEQIYDEGVDGGGDENEENVEEHEYDDSVAEACEKDQYPEVDGSDIVTDSVENEQKPFSIDENEKEKHEELLALPPHGSEVFIGGLPRDTCEDDLREMCEPIGDILEVRLMKDRDTGDVKGYAFVAFKTKEIAQRAIEELHNKEFKGKTLRCSVSETKHRLFIGNVPKNWTEDEFSKLIMGVGPGVENIELIKDPQNASRNRGFAFVLYYNNACADYSRKKMSNANFKLDGNTPTVTWADPKNSPDHSASLQVKALYVKNIPENTTTEQLKELFCRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKKTDGGHAYSPGLHPHPGYGGFSGNLYGSVRPGYGVTGGYQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGAQMSAPRPHRNNGRSSQPGRGGGSGNDEGNRSRRYRPY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4138g00022 473 CDD RRM_SF 107 179 - -
Pral4138g00022 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Pral4138g00022 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 350 IPR000504 GO:0003723
Pral4138g00022 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 253 IPR000504 GO:0003723
Pral4138g00022 473 SMART rrm1_1 106 179 IPR000504 GO:0003723
Pral4138g00022 473 SMART rrm1_1 281 353 IPR000504 GO:0003723
Pral4138g00022 473 SMART rrm1_1 186 263 IPR000504 GO:0003723
Pral4138g00022 473 MobiDBLite consensus disorder prediction 8 51 - -
Pral4138g00022 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 267 IPR000504 GO:0003723
Pral4138g00022 473 MobiDBLite consensus disorder prediction 1 54 - -
Pral4138g00022 473 MobiDBLite consensus disorder prediction 439 458 - -
Pral4138g00022 473 SUPERFAMILY RNA-binding domain, RBD 186 272 IPR035979 GO:0003676
Pral4138g00022 473 Gene3D - 268 395 IPR012677 -
Pral4138g00022 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Pral4138g00022 473 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 185 - -
Pral4138g00022 473 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 13 460 - -
Pral4138g00022 473 MobiDBLite consensus disorder prediction 435 473 - -
Pral4138g00022 473 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 186 266 - -
Pral4138g00022 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 357 IPR000504 GO:0003723
Pral4138g00022 473 Gene3D - 186 266 IPR012677 -
Pral4138g00022 473 SUPERFAMILY RNA-binding domain, RBD 93 184 IPR035979 GO:0003676
Pral4138g00022 473 SUPERFAMILY RNA-binding domain, RBD 273 381 IPR035979 GO:0003676
Pral4138g00022 473 Gene3D - 11 185 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4138g00022 Pral-Chr4138 136481 142766 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4138g00022 107 384 Eukaryotic Initiation Factors Gene Family AT1G71770 26.562 1.04e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4138g00022 K13161 - gmx:100790907 749.969