Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4138g00017 ATGCCGGAAAACATGAGTATTTCTGTGAATGGACAATCTCAGGTCCCCCCTGGCTTCAGATTCCATCCCACCGAAGAGGAGCTTTTGCAGTACTACTTGAGGAAGAAAGTTTCCTACGAGAAGATTGACCTCGATGTCATTCGTGACGTCGATCTCAACAAGCTCGAGCCATGGGATATTCAAGAGAAGTGTAAGATAGGAACCACCCCGCAGAACGATTGGTATTTCTTCAGCCACAAAGACAAGAAGTACCCCACCGGCACAAGAACCAACCGAGCAACGGCCGCCGGATTCTGGAAAGCCACCGGCCGGGATAAGGTGATATACAGCAACGGGAAGAGGATCGGAATGAGGAAGACTCTTGTCTTCTACAAAGGCCGAGCCCCTCATGGCCAGAAATCTGATTGGATCATGCACGAATATCGATTGGATGATAACCCCAGCGACACCAACATCGTGCCGAATGTGATGGGAGATGGAGCCCAGGAAGAAGGATGGGTGGTGTGCAGAATATTCAAGAAGAAGAACCATCTGAAAACCCTAGACAGCCCCTTGGCTTCGTCCATTATTACCGGAGATAGCAACAGAAGAAGCCACATCTTCGATTACTCCTGCGAGGACGAAGGAGCTTTAGAGCAGATACTTCAGCAAATAGGAAGAAGCTGCAAGGAAGAGAACGAAGCGAATTACAGCAACAATGGAAGATTCACTCTGTCAAGCTTCAACAGTGGCGGTAATAATAACAGTTCTAACAACTACAATGAAAGGTTCTTGAAGCTCCCAAGCTTAGAAAGTCCAAAGTCCACAAGCCTAGAGAATAATAATAATACCATTATCGACACCAACAGTGGGTACCACCCTATGATTCCAGAGATGGAAGGCTCCTTCCCGACCGTTCATAACATGGATGCATCTAATGGCGGAAGACTCGCCAAATGGGCGGCTCTGGATCGTCTTGTTGCTTCGCAGCTCAATGGCCAGACCGAGTCTTCAAGGCAGCTTGCTTGCTTCAGTACTGACCCCGCGAGCAGCGCCATGATGATGGGTTACTGTGCTAACGACGTCGTTCAGGATCTGCAAATGGCCACCCTACGATCTTCCTCATCATCGACGTCAACGTCCACACACAGAGCGGCGTACGTGAGTCCTCACGCACAAGATTACAATAGCAGCGACATTGACCTATGGTGCTTTCCCAGATCAGCATCATCGTTGTTGTCGTCGTCCTCAGAGCCCCTTTGCCACGTGTCGAACACGTCAGTGTAA 1266 0.4929 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNPSDTNIVPNVMGDGAQEEGWVVCRIFKKKNHLKTLDSPLASSIITGDSNRRSHIFDYSCEDEGALEQILQQIGRSCKEENEANYSNNGRFTLSSFNSGGNNNSSNNYNERFLKLPSLESPKSTSLENNNNTIIDTNSGYHPMIPEMEGSFPTVHNMDASNGGRLAKWAALDRLVASQLNGQTESSRQLACFSTDPASSAMMMGYCANDVVQDLQMATLRSSSSSTSTSTHRAAYVSPHAQDYNSSDIDLWCFPRSASSLLSSSSEPLCHVSNTSV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4138g00017 421 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Pral4138g00017 421 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Pral4138g00017 421 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Pral4138g00017 421 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 262 - -
Pral4138g00017 421 FunFam NAC domain-containing protein 24 178 - -
Pral4138g00017 421 SUPERFAMILY NAC domain 9 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4138g00017 Pral-Chr4138 87037 89144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4138g00017 1 420 NAC Transcription Factor Family AT2G46770 53.704 2.12e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral4138g00017 NAM 3.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4138g00017 - - pcin:129288653 735.717