Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4138g00016 ATGCTGATAATGTCGCAACAAAGGCAATTCCAGATGGTGGGAGGGCAATACAACGACACGACTTTGACGAAAATCTTCGTGGGAGGGCTTGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTATTTTGAGCCGTTCGGAGAAATCCTTGAAGCTGTTGTTATTACAGACAAGAACACGGGGAGATCCAAGGGTTATGGCTTTGTCACATTCAAGGATCCAGAAGCAGCCATGCGAGCATGTCAGAATCCTTCTCCAGTTATTGATGGAAGACGAGCAAACTGCAATCTTGCTTCTCTTGGTGCAAACAAAAATCGGCCTCCAACTCCTCAACTTGGTACGGGAAGGTTCAGAGCAGCACCTGGATTGGTGGGCGTGCCAGCATATCATGGCTCTTCGTCCACAGTTTTCCGTCAACCTACAGGGCAGTACACATTTCCATATTCAGCTTACGGTTACAGATTCTCTGGATATTCACAAGACTCCATGTATCCCTTGAACTATTACAGTGTGTATGGAGGCCAACAATTTTCACCGTACTATTCATCCAGTGGGGCATCTGGTGTAGCAGGGTTAATGAGTAGTAACATTTACCCATTCTGTGCTCAATATGCAGAGAGTGGCCAGGCTCATGGTTTTGGAGTTCATCAGTATCCTCAAATGGTACGCTTCCCAGTTCTTCATCAACAGCACTATGGCACTGCCACGGTCTCTCCTCCTGTTCTGTCGTTTCCTTCTTCAATGCCAATGTCAACTACCAGCGAAGTGGCAGCATCAATAGCAGCAGGCGGGCAGACAACATCAGTAGGGGCAGGTGCTTCACAAGTCTCTGCAGTAAAAGCTTCAGAACAAAACTCGTCAACTTAA 867 0.4729 MLIMSQQRQFQMVGGQYNDTTLTKIFVGGLAWETQRDTMRRYFEPFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTPQLGTGRFRAAPGLVGVPAYHGSSSTVFRQPTGQYTFPYSAYGYRFSGYSQDSMYPLNYYSVYGGQQFSPYYSSSGASGVAGLMSSNIYPFCAQYAESGQAHGFGVHQYPQMVRFPVLHQQHYGTATVSPPVLSFPSSMPMSTTSEVAASIAAGGQTTSVGAGASQVSAVKASEQNSST 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4138g00016 288 Gene3D - 4 112 IPR012677 -
Pral4138g00016 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 82 IPR000504 GO:0003723
Pral4138g00016 288 CDD RRM_RBM24_RBM38_like 23 98 - -
Pral4138g00016 288 PANTHER BOULE-RELATED 14 266 - -
Pral4138g00016 288 MobiDBLite consensus disorder prediction 267 288 - -
Pral4138g00016 288 SUPERFAMILY RNA-binding domain, RBD 5 111 IPR035979 GO:0003676
Pral4138g00016 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 100 IPR000504 GO:0003723
Pral4138g00016 288 SMART rrm1_1 24 96 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4138g00016 Pral-Chr4138 66441 68889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4138g00016 19 164 C2H2 Transcription Factor Family AT2G19380 32.335 3.44e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4138g00016 - - qsa:O6P43_018526 394.045