Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4138g00015 ATGCTGATAATGTCGCAACAAAGGCAATTCCAGATGGTGGGAGGGCAATACAACGACACGACTTTGACGAAAATCTTCGTGGGAGGGCTTGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTATTTTGAGCCGTTCGGAGAAATCCTTGAAGCTGTTGTTATTACAGACAAGAACACGGGGAGATCCAAGGGTTATGGCTTTGTCACATTCAAGGATCCAGAAGCAGCCATGCGAGCATGTCAGAATCCTTCTCCAGTTATTGATGGAAGACGAGCAAACTGCAATCTTGCTTCTCTTGGTGCAAACAAAAATCGGCCTCCAACTCCTCAACTTGGTACGGGAAGGTTCAGAGCAGCACCTGGATTGGTGGGCGTGCCAGCATATCATGGCTCTTCGTCCACAGTTTTCCGCTCGGCAAACTGTGGGGAAAAAGTCTACTCTGATCTCAGTTGCCTGAGCTTAAAAATGTCGACTGGAGAGGTTGCTTGCACTTACGCGGTTCTGATTCTCCATGATGATAACATTCCGGTCACTGCCGAGAAGATATCGACCTTGGTGAAAGCTGCAAATGTTGATGTTGAATCTTATTGGCCAAGCTTGTTTGCTAAACTTGCTGAGAAACGAAACATTGAGGATTTGATATTGAATGCTGGAGGAGGTGGGGCTCCAGTTGCCGTTGCAGCCCCAGCTGCAGCTGCTGCTGGTGGCGGCGCAGCCCCTCCTCCTCCTGCTGAGGAGAAGAAGAAGGAAGAACCCCAAGAAGAGAGCGATGATGATATGGGATTCAGCTTGTTTGATTAG 804 0.4888 MLIMSQQRQFQMVGGQYNDTTLTKIFVGGLAWETQRDTMRRYFEPFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTPQLGTGRFRAAPGLVGVPAYHGSSSTVFRSANCGEKVYSDLSCLSLKMSTGEVACTYAVLILHDDNIPVTAEKISTLVKAANVDVESYWPSLFAKLAEKRNIEDLILNAGGGGAPVAVAAPAAAAAGGGAAPPPPAEEKKKEEPQEESDDDMGFSLFD 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4138g00015 267 CDD Ribosomal_P1 161 217 - -
Pral4138g00015 267 MobiDBLite consensus disorder prediction 232 267 - -
Pral4138g00015 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 82 IPR000504 GO:0003723
Pral4138g00015 267 FunFam 60S acidic ribosomal protein P1 157 219 - -
Pral4138g00015 267 Gene3D - 4 113 IPR012677 -
Pral4138g00015 267 Gene3D - 157 219 IPR038716 -
Pral4138g00015 267 Pfam 60s Acidic ribosomal protein 178 266 - -
Pral4138g00015 267 PANTHER BOULE-RELATED 14 144 - -
Pral4138g00015 267 Hamap 50S ribosomal protein L12 [rpl12]. 162 267 IPR027534 GO:0003735|GO:0005840|GO:0006414
Pral4138g00015 267 CDD RRM_RBM24_RBM38_like 23 98 - -
Pral4138g00015 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 100 IPR000504 GO:0003723
Pral4138g00015 267 SMART rrm1_1 24 96 IPR000504 GO:0003723
Pral4138g00015 267 SUPERFAMILY RNA-binding domain, RBD 5 111 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4138g00015 Pral-Chr4138 62537 68889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4138g00015 157 267 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 58.559 2.35e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4138g00015 - - tcc:18613896 245.358