Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4138g00014 ATGCTGATAATGTCGCAACAAAGGCAATTCCAGATGGTGGGAGGGCAATACAACGACACGACTTTGACGAAAATCTTCGTGGGAGGGCTTGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTATTTTGAGCCGTTCGGAGAAATCCTTGAAGCTGTTGTTATTACAGACAAGAACACGGGGAGATCCAAGGGTTATGGCTTTGTCACATTCAAGGATCCAGAAGCAGCCATGCGAGCATGTCAGAATCCTTCTCCAGTTATTGATGGAAGACGAGCAAACTGCAATCTTGCTTCTCTTGGTGCAAACAAAAATCGGCCTCCAACTCCTCAACTTGGTACGGGAAGGTTCAGAGCAGCACCTGGATTGGTGGGCGTGCCAGCATATCATGGCTCTTCGTCCACAGTTTTCCGCTCGGCAAACTGTGGGGAAAAAGTCTACTCTGATCTCAGTTGCCTGAGCTTAAAAATGTCGACTGGAGAGGTTGCTTGCACTTACGCGGTTCTGATTCTCCATGATGATAACATTCCGGTCACTGCCGAGAAGATATCGACCTTGGTGAAAGCTGCAAATGTTGATGTTGAATCTTATTGGCCAAGCTTGTTTGCTAAACTTGCTGAGAAACGAAACATTGAGGATTTGATATTGAATGCTGGAGGAGGTGGGGCTCCAGTTGCCGTTGCAGCCCCAGCTGCAGCTGCTGCTGGTGGCGGCGCAGCCCCTCCTCCTCCTGCTGAGGAGAAGAAGGAAGAACCCCAAGAAGAGAGCGATGATGATATGGGATTCAGCTTGTTTGATTAG 801 0.4894 MLIMSQQRQFQMVGGQYNDTTLTKIFVGGLAWETQRDTMRRYFEPFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTPQLGTGRFRAAPGLVGVPAYHGSSSTVFRSANCGEKVYSDLSCLSLKMSTGEVACTYAVLILHDDNIPVTAEKISTLVKAANVDVESYWPSLFAKLAEKRNIEDLILNAGGGGAPVAVAAPAAAAAGGGAAPPPPAEEKKEEPQEESDDDMGFSLFD 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4138g00014 266 Gene3D - 4 113 IPR012677 -
Pral4138g00014 266 CDD Ribosomal_P1 161 217 - -
Pral4138g00014 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 82 IPR000504 GO:0003723
Pral4138g00014 266 MobiDBLite consensus disorder prediction 233 266 - -
Pral4138g00014 266 MobiDBLite consensus disorder prediction 251 266 - -
Pral4138g00014 266 FunFam 60S acidic ribosomal protein P1 157 219 - -
Pral4138g00014 266 Gene3D - 157 219 IPR038716 -
Pral4138g00014 266 Pfam 60s Acidic ribosomal protein 178 265 - -
Pral4138g00014 266 CDD RRM_RBM24_RBM38_like 23 98 - -
Pral4138g00014 266 Hamap 50S ribosomal protein L12 [rpl12]. 162 266 IPR027534 GO:0003735|GO:0005840|GO:0006414
Pral4138g00014 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 100 IPR000504 GO:0003723
Pral4138g00014 266 PANTHER BOULE-RELATED 14 144 - -
Pral4138g00014 266 SMART rrm1_1 24 96 IPR000504 GO:0003723
Pral4138g00014 266 SUPERFAMILY RNA-binding domain, RBD 5 111 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4138g00014 Pral-Chr4138 62537 68889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4138g00014 157 266 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 58.772 5.83e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4138g00014 - - tcc:18613896 245.358