Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4138g00010 ATGGAAGCTGTTCTCTGCGTCATCCCGCCTTCCTTCTCGGCATCAAGAAACAAGCCTCAACTCGCAGCTTCAGCGAAACGGTTCGCTTCATGCTCATCGTTTCTTCATTCTTCGGTTCATTCATTATCTTTCGGTGCTATCTTCTCTCCGCAGCCCTTCCCTTCGGACCCTTCTTCTCACTCTTCTTCATTGAAGGGACGAAGCAGGAAAGGTAGGGTTTGCACGGCTTTAGCGGGGGTGGATGAAGAAACAGTGCTTGCAGAAGAAATTAACGGAGAAAGATATGTGCACGCAGCAAACGATGACGTTTCCCATAAGAGAGAACCAAGCAAAGTTGGTAGGCCGTGTGAATTATATGTTTGTAATCTTCCGAGGAGCTGTGACTCGACGCAGCTTCAAGATATGTTCAAGCCTTATGGAGCTGTTCTGTCTGCGGAGGTTGATCGTAATGACGGGACCGGTGAGAGTAGAGGATGTGGTTATGTCACAATGGGATCAGTAAACTCAGCCAGAAAAGCAGTTGCTGCATTAGATGCATCGGATATTGGTGGGCGTGAAATGCGAGTTAGATTTTCAGCTGAGATGAATCCTGGAAGGAGAAGTGCTGAGACGATGAACTCGTCACCCCAGAAAGTTATATTCTATGAAACTCCTCACAAGTTGTATGTTGGCAATCTGGCTAGGGCTGTTAAACCTGAAGACTTGTGGAAACATTTTCAAAGATTTGGGACTGTGACTAGTGTAAGAATATTGCATGATTATAAAGTAGGGAATGGCCGCATTTATGCATTTCTCTCCTTCCTTTCACAGTCAGAACGTGATGCAGCAATGTCTCTTAATGGAACCGAACTTCGTGGCCGTACAATAGTAGTGAGAGAAGGCGTAGAGAGGACCGGGCCATAG 903 0.464 MEAVLCVIPPSFSASRNKPQLAASAKRFASCSSFLHSSVHSLSFGAIFSPQPFPSDPSSHSSSLKGRSRKGRVCTALAGVDEETVLAEEINGERYVHAANDDVSHKREPSKVGRPCELYVCNLPRSCDSTQLQDMFKPYGAVLSAEVDRNDGTGESRGCGYVTMGSVNSARKAVAALDASDIGGREMRVRFSAEMNPGRRSAETMNSSPQKVIFYETPHKLYVGNLARAVKPEDLWKHFQRFGTVTSVRILHDYKVGNGRIYAFLSFLSQSERDAAMSLNGTELRGRTIVVREGVERTGP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4138g00010 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Pral4138g00010 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Pral4138g00010 300 SUPERFAMILY RNA-binding domain, RBD 104 199 IPR035979 GO:0003676
Pral4138g00010 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 188 IPR000504 GO:0003723
Pral4138g00010 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 289 IPR000504 GO:0003723
Pral4138g00010 300 PANTHER OS02G0815200 PROTEIN 29 292 - -
Pral4138g00010 300 SUPERFAMILY RNA-binding domain, RBD 216 297 IPR035979 GO:0003676
Pral4138g00010 300 Gene3D - 88 212 IPR012677 -
Pral4138g00010 300 Gene3D - 216 295 IPR012677 -
Pral4138g00010 300 SMART rrm1_1 220 292 IPR000504 GO:0003723
Pral4138g00010 300 SMART rrm1_1 117 190 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4138g00010 Pral-Chr4138 39477 41906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4138g00010 116 291 Eukaryotic Initiation Factors Gene Family AT4G34110 28.646 1.45e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4138g00010 - - pcin:129288259 454.521