Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4138g00002 ATGATGGAGAGGATTCAAGGACCCATCAATCCCTGTTTCTTTGGTGAGCATTTGGAAGTAAATTGTTTCGAACAAGGCTTCATCAACGCAGAGGATGAGGAACAACCTTATATATCGAGCTTAGAGGATGAAAAGATGCCGTTTCTGCAGATGTTGCAGAGTGTGGAATCTCCACAGCAGTTTTTCCCATTCGCAGAGGCAAATTTTCAAACACTTTTGAGGCTACAGAACCTGAAGAAACAACCAGCATGGGAAGAAAAAGCTCACATACCCAGGTTGGAGACCCAACTCCATGCCAAAGAACTTGAAAGCTGCGTCACACACGACGTTGTCGAGATCCCCTCGCCAGTGAAATCCGAAAACAACGAAGAATCTCATCTTCTTCCTCGTTCAGCCACAATGGTTCAGAAAGAACCCACCAATCAAGCTGAAAATTCTAGCAGAGACCCCAAACGGAGAAAGCGAAAGAGAACGAGACCTGTGAAGAACAAGGAAGAAGTGGAGAACCAGAGGATGACCCACATTGCTGTCGAACGGAACCGGCGACGCCAGATGAACGACCATCTCAGTGTTCTAAGGACACTCATGCCTCCTTCCTATATTCAAAGGGGTGACCAAGCGTCTATCATCGGAGGTGCAATTGATTTCGTGAAGGAATTGGAGCAACTACTTCAAACTCTCGAGGCACAGAAGAGGATTAGAAAGAACGAAGAGATTGGATCTCCTTATGGAGAGACTGTGAAACCATCGACGCTTAGCTACGAAGAAGGAGAAGTAGAGTGTAATACTGGGGGCGAAGAAGAAGAGGTGAAGGAAGCAGAGATCATAGAGGTGATGGTGATTCAGACGCATGTGAATTTGAAGATTCGATGCACAAAGAAACAGGGGCAATTGGTGAGAGCCATTGTTGGGTTGGAAGATCTTAGGCTCAGCATTCTGCATCTCAACATCACCTCCTCGCTGGGATCGGTACTTTACTGTTTCAATCTCAAGATAGAAGAAGAGTGCAGGGTAGGGACGTCGGCGAATGAAATAGCAGAAGCGGTCCGGCATATATTCAGACCCATTGGTAATCAGTAG 1080 0.4639 MMERIQGPINPCFFGEHLEVNCFEQGFINAEDEEQPYISSLEDEKMPFLQMLQSVESPQQFFPFAEANFQTLLRLQNLKKQPAWEEKAHIPRLETQLHAKELESCVTHDVVEIPSPVKSENNEESHLLPRSATMVQKEPTNQAENSSRDPKRRKRKRTRPVKNKEEVENQRMTHIAVERNRRRQMNDHLSVLRTLMPPSYIQRGDQASIIGGAIDFVKELEQLLQTLEAQKRIRKNEEIGSPYGETVKPSTLSYEEGEVECNTGGEEEEVKEAEIIEVMVIQTHVNLKIRCTKKQGQLVRAIVGLEDLRLSILHLNITSSLGSVLYCFNLKIEEECRVGTSANEIAEAVRHIFRPIGNQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4138g00002 359 Gene3D - 160 241 IPR036638 GO:0046983
Pral4138g00002 359 MobiDBLite consensus disorder prediction 113 167 - -
Pral4138g00002 359 SMART finulus 175 226 IPR011598 GO:0046983
Pral4138g00002 359 MobiDBLite consensus disorder prediction 118 143 - -
Pral4138g00002 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 235 IPR036638 GO:0046983
Pral4138g00002 359 CDD bHLH_AtFAMA_like 172 243 - -
Pral4138g00002 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 220 IPR011598 GO:0046983
Pral4138g00002 359 Pfam Helix-loop-helix DNA-binding domain 170 221 IPR011598 GO:0046983
Pral4138g00002 359 PANTHER MAX DIMERIZATION, MAD 98 356 - -
Pral4138g00002 359 Coils Coil 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4138g00002 Pral-Chr4138 17302 20645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4138g00002 27 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 40.169 7.43e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4138g00002 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4138g00002 - - qsa:O6P43_018514 385.571