Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4137g00028 ATGGAATTGACGCGAGAAGCTGCAAAAGGGTATTCTGATCACAGCAGAGAAGAAGAATTACTGGAGGAGGAAGAGGATTTAGCTGAAACGAGTAATAAAGAAAGCAGTAAGCAATACTATCCCTTTTCTTCTTATTCTTCATCACCTCCTAATCTATGGTTGGGGATGCCTCCTCATCATCATCATCACCCTCATGATCATCACCATCAACAACAATCTCCGGAGGCCACAACCCCTTGTGAATCTCACAATTCATCATCTGGGTTAGGGTTACACCATCAGGATGCACCTTCTAATTCCAATTCCGCCATTAACAATCCCAAGAAGCTAGATTTCATGGACTTATCACTCGGAAACAAGGAAGAAGATGAAGCCAACAAGCCTATCGAGAAAGAGCACATGTTTGATAAGGTTGTGACGCCCAGCGATGTGGGCAAACTGAATCGCCTCGTCATACCAAAACAGCACGCCGAGAGGTACTTCCCGCTCGACTCTTCCTCCAACGAGAAAGGCCTTCTCTTGAATTTCGAGGACCGCAACGGCAAGCTATGGCGTTTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACCAAGGGGTGGAGCCGTTTTGTTAAAGAGAAGAAGCTTGACGCCGGCGACATTGTATCCTTCCAACGAGGCCTCGGTGAATTGTATAGGCATAGGTTGTACATAGACTGGAGGCGCCGCCCGGATTACTCCGCCACCGATCATCATCGCCATGTCGCCGCAATTACACCGTTACTCCTTCCGAATCAGTATTCCATCAGATGGGATGGCAGATTATACTCGGTTCCCACGGCTGCGCCGGTGATGCCGCCACCACCGCGACCCCACGAGCATTTCCCACAAGTGAACTACAACAATTACCCCTTTCAGCAACAACACCAGCTACTTCAGTACCCGCGACAACATCATCATCATCATCACCAGCTCTATAGTGGAAGTCAAGGAAGCTATAATGAGCTGAATTTGGGATCTGGGTCGCTTTACTACCTGAGGACGTCGTCAGCGTCGGCGCCGGGAGATCGGAATTTAATTGAGCAGAGAGAGGGAGGGGGCAATATAAGTCCGATGATAATCGATTCCGTTCCAGTAGTCCATGGTAAGAGCAGTTCTAGTAGTGGTAGAATTACTGATACTACAGCAAAGAAGCTTAGGCTATTTGGGGTGAATATGGAATGTTCTTCGTCATCAAACACAGTAGGACATGTGCCAATGGCTGATTCATCACTTTCCTCACCAAATCTTCAGTATTTGAGAGAATCCCATGAAGGAGAAGACCCACTTTCTTCATCATCGTCAGCATCAAGGTTTGCAGATCAAAAGGGGAAAACTTCGGTGCTTTTTGATTTGAAACCGTCCTTCCAATACCGACAGTAG 1410 0.4759 MELTREAAKGYSDHSREEELLEEEEDLAETSNKESSKQYYPFSSYSSSPPNLWLGMPPHHHHHPHDHHHQQQSPEATTPCESHNSSSGLGLHHQDAPSNSNSAINNPKKLDFMDLSLGNKEEDEANKPIEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGELYRHRLYIDWRRRPDYSATDHHRHVAAITPLLLPNQYSIRWDGRLYSVPTAAPVMPPPPRPHEHFPQVNYNNYPFQQQHQLLQYPRQHHHHHHQLYSGSQGSYNELNLGSGSLYYLRTSSASAPGDRNLIEQREGGGNISPMIIDSVPVVHGKSSSSSGRITDTTAKKLRLFGVNMECSSSSNTVGHVPMADSSLSSPNLQYLRESHEGEDPLSSSSSASRFADQKGKTSVLFDLKPSFQYRQ 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4137g00028 469 MobiDBLite consensus disorder prediction 1 17 - -
Pral4137g00028 469 Gene3D - 129 251 IPR015300 -
Pral4137g00028 469 CDD B3_DNA 133 222 IPR003340 GO:0003677
Pral4137g00028 469 MobiDBLite consensus disorder prediction 33 51 - -
Pral4137g00028 469 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 61 417 IPR044800 GO:0003700
Pral4137g00028 469 FunFam B3 domain-containing protein 128 249 - -
Pral4137g00028 469 SUPERFAMILY DNA-binding pseudobarrel domain 132 225 IPR015300 -
Pral4137g00028 469 SMART B3_2 135 240 IPR003340 GO:0003677
Pral4137g00028 469 MobiDBLite consensus disorder prediction 1 107 - -
Pral4137g00028 469 ProSiteProfiles B3 DNA-binding domain profile. 135 240 IPR003340 GO:0003677
Pral4137g00028 469 Pfam B3 DNA binding domain 135 239 IPR003340 GO:0003677
Pral4137g00028 469 MobiDBLite consensus disorder prediction 73 107 - -
Pral4137g00028 469 MobiDBLite consensus disorder prediction 431 453 - -
Pral4137g00028 469 Coils Coil 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4137g00028 Pral-Chr4137 174547 176660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4137g00028 114 410 RAV Transcription Factor Family AT2G46870 49.038 8.61e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4137g00028 B3 2.9e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4137g00028 K09287 - gmx:100781424 383.645