Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4137g00027 ATGGAATTGACGCGAGAAGCTGCAAAAGGGTATTCTGATCACAGCAGAGAAGAAGAATTACTGGAGGAGGAAGAGGATTTAGCTGAAACGAGTAATAAAGAAAGCAGGTTACACCATCAGGATGCACCTTCTAATTCCAATTCCGCCATTAACAATCCCAAGAAGCTAGATTTCATGGACTTATCACTCGGAAACAAGGAAGAAGATGAAGCCAACAAGCCTATCGAGAAAGAGCACATGTTTGATAAGGTTGTGACGCCCAGCGATGTGGGCAAACTGAATCGCCTCGTCATACCAAAACAGCACGCCGAGAGGTACTTCCCGCTCGACTCTTCCTCCAACGAGAAAGGCCTTCTCTTGAATTTCGAGGACCGCAACGGCAAGCTATGGCGTTTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACCAAGGGGTGGAGCCGTTTTGTTAAAGAGAAGAAGCTTGACGCCGGCGACATTGTATCCTTCCAACGAGGCCTCGGTGAATTGTATAGGCATAGGTTGTACATAGACTGGAGGCGCCGCCCGGATTACTCCGCCACCGATCATCATCGCCATGTCGCCGCAATTACACCGTTACTCCTTCCGAATCAGTATTCCATCAGATGGGATGGCAGATTATACTCGGTTCCCACGGCTGCGCCGGTGATGCCGCCACCACCGCGACCCCACGAGCATTTCCCACAAGTGAACTACAACAATTACCCCTTTCAGCAACAACACCAGCTACTTCAGTACCCGCGACAACATCATCATCATCATCACCAGCTCTATAGTGGAAGTCAAGGAAGCTATAATGAGCTGAATTTGGGATCTGGGTCGCTTTACTACCTGAGGACGTCGTCAGCGTCGGCGCCGGGAGATCGGAATTTAATTGAGCAGAGAGAGGGAGGGGGCAATATAAGTCCGATGATAATCGATTCCGTTCCAGTAGTCCATGGTAAGAGCAGTTCTAGTAGTGGTAGAATTACTGATACTACAGCAAAGAAGCTTAGGCTATTTGGGGTGAATATGGAATGTTCTTCGTCATCAAACACAGTAGGACATGTGCCAATGGCTGATTCATCACTTTCCTCACCAAATCTTCAGTATTTGAGAGAATCCCATGAAGGAGAAGACCCACTTTCTTCATCATCGTCAGCATCAAGGTTTGCAGATCAAAAGGGGAAAACTTCGGTGCTTTTTGATTTGAAACCGTCCTTCCAATACCGACAGTAG 1248 0.4808 MELTREAAKGYSDHSREEELLEEEEDLAETSNKESRLHHQDAPSNSNSAINNPKKLDFMDLSLGNKEEDEANKPIEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGELYRHRLYIDWRRRPDYSATDHHRHVAAITPLLLPNQYSIRWDGRLYSVPTAAPVMPPPPRPHEHFPQVNYNNYPFQQQHQLLQYPRQHHHHHHQLYSGSQGSYNELNLGSGSLYYLRTSSASAPGDRNLIEQREGGGNISPMIIDSVPVVHGKSSSSSGRITDTTAKKLRLFGVNMECSSSSNTVGHVPMADSSLSSPNLQYLRESHEGEDPLSSSSSASRFADQKGKTSVLFDLKPSFQYRQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4137g00027 415 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 29 362 IPR044800 GO:0003700
Pral4137g00027 415 SMART B3_2 81 186 IPR003340 GO:0003677
Pral4137g00027 415 SUPERFAMILY DNA-binding pseudobarrel domain 78 171 IPR015300 -
Pral4137g00027 415 Gene3D - 75 197 IPR015300 -
Pral4137g00027 415 MobiDBLite consensus disorder prediction 1 17 - -
Pral4137g00027 415 Pfam B3 DNA binding domain 81 185 IPR003340 GO:0003677
Pral4137g00027 415 MobiDBLite consensus disorder prediction 1 54 - -
Pral4137g00027 415 ProSiteProfiles B3 DNA-binding domain profile. 81 186 IPR003340 GO:0003677
Pral4137g00027 415 MobiDBLite consensus disorder prediction 377 399 - -
Pral4137g00027 415 Coils Coil 14 34 - -
Pral4137g00027 415 FunFam B3 domain-containing protein 74 195 - -
Pral4137g00027 415 CDD B3_DNA 79 168 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4137g00027 Pral-Chr4137 174547 176661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4137g00027 60 356 RAV Transcription Factor Family AT2G46870 48.875 1.38e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4137g00027 B3 2.3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4137g00027 K09287 - gmx:100778733 364.385