Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4135g00107 ATGGGTGGTTGGGCAGGAACAGATGACAATTCGCGTGACTCTCCGGGGCTGGAATTAACTGGAAAGATCATGGTCGTAGCTATAATATTCCTCTTTTTCGTGATTGTGGTTGTCTGTTTCCTCCATCTCTACGCCAAATGGTTCTGGTGGAACACTGAAGGGAGCAGCACCACCACCCGCCGCCGCAGCAGCCGCCGCCGCCGCCGCTTTGTCTTCGCACCAGGACAAGACCCCGCTATTTACGGCGTCCAGAGACGTGGGCTTGACCCAGAAGTCCTTAGGTCCTTGCCTGTATTGGTATACCGACCAGAGGATTTCAAAGATGGTTTGGAGTGTGCAGTTTGTCTCAGCGAGGTCGCTCATGGAGAAAAAGCAAGGATATTACCCAAATGCAATCATGGGTTTCACGTAGAATGCATTGATATGTGGTTCCAATCCCATTCTACCTGTCCACTTTGTAGGAACCCGGTCGCTTCTGAGTCCTCTGAATCCAATAATAGTTCAGGTGTTCGAGGAAATACCTCAGACATCTATAGTCCGTCATCAGACTCAGAAAGTTCAGACTCTATGAGCGAGGTTGATTTAGAGTCTGCAAATTTCCCCACAAATGTTTTGATTTGGGGAAATCAGATCCAAGTAAATTCTATTGGCGCAGGTCCTTCTATTGAGGCACCTTCGTCCTCATCATCAGCGGCAGCAGATAGTTGTAGCAGTAGTAACAATAACAACAGACGTAATGGAATGTTGGTGATTGACATACCAAGAGAAACGAATCCATCATCTTTACCTTCTACTAGCAGGTGTGCTGACGATGAGTTGAAGTCTCCAATGACATCTAGGCTCAAGTCGTTCAAGAGGATGTTAAGCATGAAGTTCAGTCCTCGTAGCCCGAGTTCTGTGGATGTGGAACAAGCAGGGAGAGGACAGAGCTAG 933 0.4791 MGGWAGTDDNSRDSPGLELTGKIMVVAIIFLFFVIVVVCFLHLYAKWFWWNTEGSSTTTRRRSSRRRRRFVFAPGQDPAIYGVQRRGLDPEVLRSLPVLVYRPEDFKDGLECAVCLSEVAHGEKARILPKCNHGFHVECIDMWFQSHSTCPLCRNPVASESSESNNSSGVRGNTSDIYSPSSDSESSDSMSEVDLESANFPTNVLIWGNQIQVNSIGAGPSIEAPSSSSSAAADSCSSSNNNNRRNGMLVIDIPRETNPSSLPSTSRCADDELKSPMTSRLKSFKRMLSMKFSPRSPSSVDVEQAGRGQS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4135g00107 310 SMART ring_2 112 153 IPR001841 -
Pral4135g00107 310 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Pral4135g00107 310 SUPERFAMILY RING/U-box 92 159 - -
Pral4135g00107 310 MobiDBLite consensus disorder prediction 221 247 - -
Pral4135g00107 310 MobiDBLite consensus disorder prediction 292 310 - -
Pral4135g00107 310 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 14 162 IPR044675 -
Pral4135g00107 310 Pfam Ring finger domain 111 154 IPR001841 -
Pral4135g00107 310 CDD RING-H2_EL5-like 111 154 - -
Pral4135g00107 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 159 IPR013083 -
Pral4135g00107 310 MobiDBLite consensus disorder prediction 257 272 - -
Pral4135g00107 310 FunFam RING-H2 finger protein ATL3 81 159 - -
Pral4135g00107 310 MobiDBLite consensus disorder prediction 221 310 - -
Pral4135g00107 310 MobiDBLite consensus disorder prediction 157 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4135g00107 Pral-Chr4135 809327 810840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4135g00107 16 289 C3H Transcription Factor Family AT1G53820 41.751 5.84e-67 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4135g00107 - - qsa:O6P43_027473 308.916