Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4135g00091 ATGGCTTCGTCTTCTTCACTTAAAACAACCAGAAAGCCTGGGAAAGGTAGGAGCAAGATCGAGATTAAGAAAGTGGAACAAACCAGCAAGCGTTTCGTCACATTCTCCAAACGCAAATTAGGCCTCTTCCGCAAAGCCGCCGAACTATCCCTTCTCTGCGATTCTCAAATCGCCGTCGTCGTCTTCTCCCAATTCGGCAAGGTCTACTCCTCCGGCTACCCCGACCCTGACGCCGTCATCCGCCGCTACCTCTCCTGCGCATCCTCCTCGATGTCGGACTCTACGTCGGCTCATGATCCGGAAAGAGAATGGGCGATGTCGCCGCTGAGACGGGAATATGAGGAGGCCATGAAGGTGTTGGAGGAGGAAAAGAAATCCCTCAGTGCTGGACTACCGGGTCGGGTTGTGAGAATGGGTTCTGGTGGAACCGTTCGGTTGGGGAGATGGGTTTGGAAGAAGTCATGCAGTTCAAGGAGCGTGTTGAACAGCTGA 492 0.5366 MASSSSLKTTRKPGKGRSKIEIKKVEQTSKRFVTFSKRKLGLFRKAAELSLLCDSQIAVVVFSQFGKVYSSGYPDPDAVIRRYLSCASSSMSDSTSAHDPEREWAMSPLRREYEEAMKVLEEEKKSLSAGLPGRVVRMGSGGTVRLGRWVWKKSCSSRSVLNS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4135g00091 163 PANTHER MADS BOX PROTEIN 17 117 - -
Pral4135g00091 163 MobiDBLite consensus disorder prediction 1 21 - -
Pral4135g00091 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 70 IPR002100 GO:0003677|GO:0046983
Pral4135g00091 163 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Pral4135g00091 163 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Pral4135g00091 163 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Pral4135g00091 163 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Pral4135g00091 163 Coils Coil 110 130 - -
Pral4135g00091 163 Gene3D - 28 103 IPR036879 GO:0003677|GO:0046983
Pral4135g00091 163 SUPERFAMILY SRF-like 16 90 IPR036879 GO:0003677|GO:0046983
Pral4135g00091 163 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4135g00091 Pral-Chr4135 690813 691304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4135g00091 16 126 Type I MADS-box Gene Family AT1G65360 38.739 1.51e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4135g00091 SRF-TF 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4135g00091 - - pcin:129319416 174.866