Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4135g00062 ATGGAGGTGTGCGAAATTTACAGTGAAGCTGAAGGGTCCGATCTTGATTCGTTTTCGGATGATTCGGCAGGAGATCCCGATTTTGACATAACCGAAGAAACCTATAGCAAGTTTTCAAATCTCTCAATCGGAAAGAAGAAGGCTAAGACGAGTATTTTTGATGGTGAGGTTTGGCGAATGGAGATTGACCCAGATGAGCAGAAGACTGAACCCGGTCTTGATGAGAATGATGAGAAAAATTTTGATAAAGTACAAAAAATCATAGAAGAGAAAGAATTGGAGAAACTAAAAGTACCTGAATGCAAGTTGTATCTGAGGAAGAATGGACTGAGATTGACAGGAAATAAGGACACACTCATTCAACGAATAAGGGAGCATCTCGAGATTATAAATGGTGGAGGAGAGAGGAAGTACCCGCCTTCTAGCTTTGTTCAGAATTGTAAAGGTGATGCATGCACCGGTGATGTTGTTCTGTTTGAGCAAAATGTCTACGAAATGTTCAGCGTAGCATCTAGGAGCGCCAGTGGTCCGCCTTGTGGCAAAAGTATTGTTGCAGGTCGTATAGTGAAGGAAAGCTATGGCGCTGCGAAGCAGCAGCATACATTTACGATTGAAGTACTGTGGAGCAAGGGAGAGAAGCTTCTTCCTCCACTGTACCCCCTATTAATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAGATGGGATGATGAAGGGAAAAGGCAGAAAATTTTGATGGAAAAACACTCCAGGGGAAATGCTGCAAGGGCCAACAGAGAAGCAAGGATACAAGAAAAGGAAAGGAGGAAAACAAGTAGGGACAACAGGGTTTCCAGGAAGGAGTTATCAAGTAACCAATCTCAATCACATCCACTCACGACGAAGACACAATATCAACATCAAGAATCCAGATGCATCGATCGAGCGAAGCTAAAATTATGCTTTGAACAAGGCCAAAGAGTTGCAACAAGGCCTCACCATTTCAAAGAGAAACTCATCGCTTCTGAGCTTACTGAGAATTACTGTTGCAGTACATCGACAAACAGGCTTGCACAATGGTCTTACCAGAGAAAACCTTTGACAAGCGCCAATTACTTGTTTCCGTTAACCCTAAACGGAGAATCCTTTAAGCAAAAACAACCTTGCAAATATTATGATCAAGGTAGGTGTCGTTTTGGAGACAACTGCAGATTTTTACATGATGTCAGATCATAG 1224 0.4224 MEVCEIYSEAEGSDLDSFSDDSAGDPDFDITEETYSKFSNLSIGKKKAKTSIFDGEVWRMEIDPDEQKTEPGLDENDEKNFDKVQKIIEEKELEKLKVPECKLYLRKNGLRLTGNKDTLIQRIREHLEIINGGGERKYPPSSFVQNCKGDACTGDVVLFEQNVYEMFSVASRSASGPPCGKSIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKLLPPLYPLLIKGRNLYRLKTLRQRWDDEGKRQKILMEKHSRGNAARANREARIQEKERRKTSRDNRVSRKELSSNQSQSHPLTTKTQYQHQESRCIDRAKLKLCFEQGQRVATRPHHFKEKLIASELTENYCCSTSTNRLAQWSYQRKPLTSANYLFPLTLNGESFKQKQPCKYYDQGRCRFGDNCRFLHDVRS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4135g00062 407 SUPERFAMILY SAP domain 83 128 IPR036361 -
Pral4135g00062 407 ProSiteProfiles Zinc finger C3H1-type profile. 379 406 IPR000571 GO:0046872
Pral4135g00062 407 SMART c3hfinal6 380 405 IPR000571 GO:0046872
Pral4135g00062 407 SUPERFAMILY CCCH zinc finger 380 404 IPR036855 GO:0046872
Pral4135g00062 407 Gene3D - 362 407 - -
Pral4135g00062 407 MobiDBLite consensus disorder prediction 284 302 - -
Pral4135g00062 407 MobiDBLite consensus disorder prediction 249 302 - -
Pral4135g00062 407 Gene3D SAP domain 75 139 IPR036361 -
Pral4135g00062 407 MobiDBLite consensus disorder prediction 249 283 - -
Pral4135g00062 407 Pfam CCCH-type zinc finger 384 404 IPR041367 -
Pral4135g00062 407 MobiDBLite consensus disorder prediction 7 26 - -
Pral4135g00062 407 Coils Coil 257 277 - -
Pral4135g00062 407 PANTHER SAP DOMAIN-CONTAINING PROTEIN 15 329 - -
Pral4135g00062 407 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Pral4135g00062 407 SMART sap_9 93 127 IPR003034 -
Pral4135g00062 407 Pfam SAP domain 93 127 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4135g00062 Pral-Chr4135 523326 527092 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4135g00062 SAP 3.2e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4135g00062 - - pcin:129288862 590.882