Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4135g00061 ATGGAGGTGTGCGAAATTTACAGTGAAGCTGAAGGGTCCGATCTTGATTCGTTTTCGGATGATTCGGCAGGAGATCCCGATTTTGACATAACCGAAGAAACCTATAGCAAGTTTTCAAATCTCTCAATCGGAAAGAAGAAGGCTAAGACGAGTATTTTTGATGGTGAGGTTTGGCGAATGGAGATTGACCCAGATGAGCAGAAGACTGAACCCGGTCTTGATGAGAATGATGAGAAAAATTTTGATAAAGTACAAAAAATCATAGAAGAGAAAGAATTGGAGAAACTAAAAGTACCTGAATGCAAGTTGTATCTGAGGAAGAATGGACTGAGATTGACAGGAAATAAGGACACACTCATTCAACGAATAAGGGAGCATCTCGAGATTATAAATGGTGGAGGAGAGAGGAAGTACCCGCCTTCTAGCTTTGTTCAGAATTGTAAAGGTGATGCATGCACCGGTGATGTTGTTCTGTTTGAGCAAAATGTCTACGAAATGTTCAGCGTAGCATCTAGGAGCGCCAGTGGTCCGCCTTGTGGCAAAAGTATTGTTGCAGGTCGTATAGTGAAGGAAAGCTATGGCGCTGCGAAGCAGCAGCATACATTTACGATTGAAGTACTGTGGAGCAAGGGAGAGAAGCTTCTTCCTCCACTGTACCCCCTATTAATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAGATGGGATGATGAAGGGAAAAGGCAGAAAATTTTGATGGAAAAACACTCCAGGGGAAATGCTGCAAGGGCCAACAGAGAAGCAAGGATACAAGAAAAGGAAAGGAGGAAAACAAGTAGGGACAACAGGAAGGAGTTATCAAGTAACCAATCTCAATCACATCCACTCACGACGAAGACACAATATCAACATCAAGAATCCAGATGCATCGATCGAGCGAAGCTAAAATTATGCTTTGAACAAGGCCAAAGAGTTGCAACAAGGCCTCACCATTTCAAAGAGAAACTCATCGCTTCTGAGCTTACTGAGAATTACTGTTGCAGTACATCGACAAACAGGCTTGCACAATGGTCTTACCAGAGAAAACCTTTGACAAGCGCCAATTACTTGTTTCCGTTAACCCTAAACGGAGAATCCTTTAAGCAAAAACAACCTTGCAAATATTATGATCAAGGTAGGTGTCGTTTTGGAGACAACTGCAGATTTTTACATGATGTCAGATCATAG 1215 0.4214 MEVCEIYSEAEGSDLDSFSDDSAGDPDFDITEETYSKFSNLSIGKKKAKTSIFDGEVWRMEIDPDEQKTEPGLDENDEKNFDKVQKIIEEKELEKLKVPECKLYLRKNGLRLTGNKDTLIQRIREHLEIINGGGERKYPPSSFVQNCKGDACTGDVVLFEQNVYEMFSVASRSASGPPCGKSIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKLLPPLYPLLIKGRNLYRLKTLRQRWDDEGKRQKILMEKHSRGNAARANREARIQEKERRKTSRDNRKELSSNQSQSHPLTTKTQYQHQESRCIDRAKLKLCFEQGQRVATRPHHFKEKLIASELTENYCCSTSTNRLAQWSYQRKPLTSANYLFPLTLNGESFKQKQPCKYYDQGRCRFGDNCRFLHDVRS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4135g00061 404 MobiDBLite consensus disorder prediction 245 300 - -
Pral4135g00061 404 Pfam CCCH-type zinc finger 381 401 IPR041367 -
Pral4135g00061 404 SUPERFAMILY SAP domain 83 128 IPR036361 -
Pral4135g00061 404 ProSiteProfiles Zinc finger C3H1-type profile. 376 403 IPR000571 GO:0046872
Pral4135g00061 404 PANTHER SAP DOMAIN-CONTAINING PROTEIN 15 319 - -
Pral4135g00061 404 SMART c3hfinal6 377 402 IPR000571 GO:0046872
Pral4135g00061 404 Gene3D - 359 404 - -
Pral4135g00061 404 MobiDBLite consensus disorder prediction 281 300 - -
Pral4135g00061 404 MobiDBLite consensus disorder prediction 7 26 - -
Pral4135g00061 404 Gene3D SAP domain 75 139 IPR036361 -
Pral4135g00061 404 SUPERFAMILY CCCH zinc finger 377 401 IPR036855 GO:0046872
Pral4135g00061 404 Pfam SAP domain 93 127 IPR003034 -
Pral4135g00061 404 Coils Coil 257 277 - -
Pral4135g00061 404 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Pral4135g00061 404 MobiDBLite consensus disorder prediction 245 280 - -
Pral4135g00061 404 SMART sap_9 93 127 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4135g00061 Pral-Chr4135 523326 527092 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4135g00061 SAP 3.2e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4135g00061 - - pcin:129288862 581.637