Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4135g00054 ATGCAAGTTCTTGCCGCAGTGTCTTCTTCATCTGTGAGAAAATGCAGGTATGTGGGGAATATTCATCCGCAGGTAACGGAGTCCTTACTTCAGGAACTTTTTGCAAGTAATGGCCCGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAATCATCTTATGGATTCATTCACTATTTTGACCGTAGATCAGCTGCTCTTGCCATATTGTCTCTTAATGGGAGGCACCTGTTTGGTCAGCCTATCAAAGTCAACTGGGCCTATGCTAGTGGGCAAAGGGAAGATACATCAGGTCATTACAACGTATTCGTTGGTGATCTTAGTCCAGAGGTTACTGATGCTACATTGTTTGCATGCTTTTCTGTTTACCCCAGTTGCTCAGATGCAAGGGTTATGTGGGATCAGAAAACAGGACGATCAAGAGGGTTCGGATTTGTTTCATTTCGTAACCAACAGGACGCACAAAGCGCTATTAATGATTTGACTGGCAAGTGGCTTGGTAGTAGACAAATACGCTGTAATTGGGCAACAAAAGGTGCTGGTTCTAGTGAGGACAAACAAGGTTCAGACACTAAAAGTGTGGTCGAACTAACAAATGGTTCATCTGAAGATGTTAAGGAGACGAATAACAGTGATGCCCCAGAGAACAATCCTCAGTATACAACCGTCTATGTGGGAAATCTTGCACCAGAGGTAACCCAGCTTGATCTCCATCGCCACTTCCACAATCTTGGGGCTGGTGCGATAGAGGAGGTCCGAGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTATAGTACTCATTCTGAAGCGGCAATGGCTATTCAGATGGGGAATACCCAGTCTTTCCTCTTGGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCTCCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTACTGCGCCTCTGCCTGGTTTTTCTGCATCTGATCTTCTGGCCTATGAGCGTCAGCTAGCAATGAGCAAGATGGGTGGTGTCCATGCCCTGATGCATCCCCAAGGGCAGCATCCTCTTAAACAGGCAGCACTTGGAGGAAGCCAGGCGATATATGATGGTGGGTTCCAGAATGTTGCTGCACAACAAATGATGTACTACCAGTGA 1134 0.4656 MQVLAAVSSSSVRKCRYVGNIHPQVTESLLQELFASNGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNVFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSSEDKQGSDTKSVVELTNGSSEDVKETNNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHNLGAGAIEEVRVQRDKGFGFVRYSTHSEAAMAIQMGNTQSFLLGKQIKCSWGSKPTPPGTASNPLPPPATAPLPGFSASDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAALGGSQAIYDGGFQNVAAQQMMYYQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4135g00054 377 SUPERFAMILY RNA-binding domain, RBD 209 304 IPR035979 GO:0003676
Pral4135g00054 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 286 IPR000504 GO:0003723
Pral4135g00054 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 171 IPR000504 GO:0003723
Pral4135g00054 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 82 IPR000504 GO:0003723
Pral4135g00054 377 Gene3D - 93 193 IPR012677 -
Pral4135g00054 377 CDD RRM2_PUB1 98 177 - -
Pral4135g00054 377 Gene3D - 197 299 IPR012677 -
Pral4135g00054 377 Gene3D - 5 92 IPR012677 -
Pral4135g00054 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 88 IPR000504 GO:0003723
Pral4135g00054 377 SMART rrm1_1 100 173 IPR000504 GO:0003723
Pral4135g00054 377 SMART rrm1_1 221 291 IPR000504 GO:0003723
Pral4135g00054 377 SMART rrm1_1 15 84 IPR000504 GO:0003723
Pral4135g00054 377 SUPERFAMILY RNA-binding domain, RBD 17 92 IPR035979 GO:0003676
Pral4135g00054 377 SMART rrm2_1 100 173 IPR003954 GO:0003676
Pral4135g00054 377 CDD RRM1_PUB1 17 86 - -
Pral4135g00054 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 295 IPR000504 GO:0003723
Pral4135g00054 377 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 16 298 - -
Pral4135g00054 377 SUPERFAMILY RNA-binding domain, RBD 93 183 IPR035979 GO:0003676
Pral4135g00054 377 FunFam Oligouridylate-binding protein 1C 197 299 - -
Pral4135g00054 377 FunFam oligouridylate-binding protein 1-like isoform X2 97 192 - -
Pral4135g00054 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
Pral4135g00054 377 MobiDBLite consensus disorder prediction 177 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4135g00054 Pral-Chr4135 486026 492109 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4135g00054 17 288 Eukaryotic Initiation Factors Gene Family AT1G71770 27.500 8.93e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4135g00054 K13201 - mof:131163750 677.937