Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4135g00053 ATGCAGAATCCCAGGCTGAAGCAACACCAGCAGCAAGCTCTGATGCAACAAGCTCTTATGCAACAACAGTCTCTGTACCACCCTGGCCTCTTAGCTGCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATGCAAGTTCTTGCCGCAGTGTGTATGTGGGGAATATTCATCCGCAGGTAACGGAGTCCTTACTTCAGGAACTTTTTGCAAGTAATGGCCCGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAATCATCTTATGGATTCATTCACTATTTTGACCGTAGATCAGCTGCTCTTGCCATATTGTCTCTTAATGGGAGGCACCTGTTTGGTCAGCCTATCAAAGTCAACTGGGCCTATGCTAGTGGGCAAAGGGAAGATACATCAGGTCATTACAACGTATTCGTTGGTGATCTTAGTCCAGAGGTTACTGATGCTACATTGTTTGCATGCTTTTCTGTTTACCCCAGTTGCTCAGATGCAAGGGTTATGTGGGATCAGAAAACAGGACGATCAAGAGGGTTCGGATTTGTTTCATTTCGTAACCAACAGGACGCACAAAGCGCTATTAATGATTTGACTGGCAAGTGGCTTGGTAGTAGACAAATACGCTGTAATTGGGCAACAAAAGGTGCTGGTTCTAGTGAGGACAAACAAGGTTCAGACACTAAAAGTGTGGTCGAACTAACAAATGGTTCATCTGAAGATGTTAAGGAGACGAATAACAGTGATGCCCCAGAGAACAATCCTCAGTATACAACCGTCTATGTGGGAAATCTTGCACCAGAGGTAACCCAGCTTGATCTCCATCGCCACTTCCACAATCTTGGGGCTGGTGCGATAGAGGAGGTCCGAGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTATAGTACTCATTCTGAAGCGGCAATGGCTATTCAGATGGGGAATACCCAGTCTTTCCTCTTGGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCTCCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTACTGCGCCTCTGCCTGGTTTTTCTGCATCTGATCTTCTGGCCTATGAGCGTCAGCTAGCAATGAGCAAGATGGGTGGTGTCCATGCCCTGATGCATCCCCAAGGGCAGCATCCTCTTAAACAGGCAGCACTTGGAGGAAGCCAGGCGATATATGATGGTGGGTTCCAGAATGTTGCTGCACAACAAATGATGTACTACCAGTGA 1254 0.4705 MQNPRLKQHQQQALMQQALMQQQSLYHPGLLAAPQIEPIPSGNLPPGFDASSCRSVYVGNIHPQVTESLLQELFASNGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNVFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSSEDKQGSDTKSVVELTNGSSEDVKETNNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHNLGAGAIEEVRVQRDKGFGFVRYSTHSEAAMAIQMGNTQSFLLGKQIKCSWGSKPTPPGTASNPLPPPATAPLPGFSASDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAALGGSQAIYDGGFQNVAAQQMMYYQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4135g00053 417 SUPERFAMILY RNA-binding domain, RBD 53 218 IPR035979 GO:0003676
Pral4135g00053 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 335 IPR000504 GO:0003723
Pral4135g00053 417 FunFam oligouridylate-binding protein 1-like isoform X2 137 232 - -
Pral4135g00053 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 52 338 - -
Pral4135g00053 417 CDD RRM1_PUB1 56 126 - -
Pral4135g00053 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Pral4135g00053 417 Gene3D - 237 339 IPR012677 -
Pral4135g00053 417 Gene3D - 136 232 IPR012677 -
Pral4135g00053 417 Gene3D - 1 135 IPR012677 -
Pral4135g00053 417 CDD RRM2_PUB1 138 217 - -
Pral4135g00053 417 SMART rrm2_1 140 213 IPR003954 GO:0003676
Pral4135g00053 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 326 IPR000504 GO:0003723
Pral4135g00053 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Pral4135g00053 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Pral4135g00053 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
Pral4135g00053 417 MobiDBLite consensus disorder prediction 217 259 - -
Pral4135g00053 417 SUPERFAMILY RNA-binding domain, RBD 249 344 IPR035979 GO:0003676
Pral4135g00053 417 FunFam Oligouridylate-binding protein 1C 237 339 - -
Pral4135g00053 417 SMART rrm1_1 261 331 IPR000504 GO:0003723
Pral4135g00053 417 SMART rrm1_1 55 124 IPR000504 GO:0003723
Pral4135g00053 417 SMART rrm1_1 140 213 IPR000504 GO:0003723
Pral4135g00053 417 FunFam oligouridylate-binding protein 1B-like isoform X2 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4135g00053 Pral-Chr4135 485921 492109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4135g00053 55 328 Eukaryotic Initiation Factors Gene Family AT1G71770 27.660 1.04e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4135g00053 K13201 - qsa:O6P43_018428 743.806