Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral4135g00053 | ATGCAGAATCCCAGGCTGAAGCAACACCAGCAGCAAGCTCTGATGCAACAAGCTCTTATGCAACAACAGTCTCTGTACCACCCTGGCCTCTTAGCTGCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATGCAAGTTCTTGCCGCAGTGTGTATGTGGGGAATATTCATCCGCAGGTAACGGAGTCCTTACTTCAGGAACTTTTTGCAAGTAATGGCCCGGTTGAAGGTTGTAAACTTATTAGAAAGGAGAAATCATCTTATGGATTCATTCACTATTTTGACCGTAGATCAGCTGCTCTTGCCATATTGTCTCTTAATGGGAGGCACCTGTTTGGTCAGCCTATCAAAGTCAACTGGGCCTATGCTAGTGGGCAAAGGGAAGATACATCAGGTCATTACAACGTATTCGTTGGTGATCTTAGTCCAGAGGTTACTGATGCTACATTGTTTGCATGCTTTTCTGTTTACCCCAGTTGCTCAGATGCAAGGGTTATGTGGGATCAGAAAACAGGACGATCAAGAGGGTTCGGATTTGTTTCATTTCGTAACCAACAGGACGCACAAAGCGCTATTAATGATTTGACTGGCAAGTGGCTTGGTAGTAGACAAATACGCTGTAATTGGGCAACAAAAGGTGCTGGTTCTAGTGAGGACAAACAAGGTTCAGACACTAAAAGTGTGGTCGAACTAACAAATGGTTCATCTGAAGATGTTAAGGAGACGAATAACAGTGATGCCCCAGAGAACAATCCTCAGTATACAACCGTCTATGTGGGAAATCTTGCACCAGAGGTAACCCAGCTTGATCTCCATCGCCACTTCCACAATCTTGGGGCTGGTGCGATAGAGGAGGTCCGAGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTATAGTACTCATTCTGAAGCGGCAATGGCTATTCAGATGGGGAATACCCAGTCTTTCCTCTTGGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCTCCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTACTGCGCCTCTGCCTGGTTTTTCTGCATCTGATCTTCTGGCCTATGAGCGTCAGCTAGCAATGAGCAAGATGGGTGGTGTCCATGCCCTGATGCATCCCCAAGGGCAGCATCCTCTTAAACAGGCAGCACTTGGAGGAAGCCAGGCGATATATGATGGTGGGTTCCAGAATGTTGCTGCACAACAAATGATGTACTACCAGTGA | 1254 | 0.4705 | MQNPRLKQHQQQALMQQALMQQQSLYHPGLLAAPQIEPIPSGNLPPGFDASSCRSVYVGNIHPQVTESLLQELFASNGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNVFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSSEDKQGSDTKSVVELTNGSSEDVKETNNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHNLGAGAIEEVRVQRDKGFGFVRYSTHSEAAMAIQMGNTQSFLLGKQIKCSWGSKPTPPGTASNPLPPPATAPLPGFSASDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAALGGSQAIYDGGFQNVAAQQMMYYQ | 417 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral4135g00053 | 417 | SUPERFAMILY | RNA-binding domain, RBD | 53 | 218 | IPR035979 | GO:0003676 | |
Pral4135g00053 | 417 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 260 | 335 | IPR000504 | GO:0003723 | |
Pral4135g00053 | 417 | FunFam | oligouridylate-binding protein 1-like isoform X2 | 137 | 232 | - | - | |
Pral4135g00053 | 417 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 52 | 338 | - | - | |
Pral4135g00053 | 417 | CDD | RRM1_PUB1 | 56 | 126 | - | - | |
Pral4135g00053 | 417 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | IPR000504 | GO:0003723 | |
Pral4135g00053 | 417 | Gene3D | - | 237 | 339 | IPR012677 | - | |
Pral4135g00053 | 417 | Gene3D | - | 136 | 232 | IPR012677 | - | |
Pral4135g00053 | 417 | Gene3D | - | 1 | 135 | IPR012677 | - | |
Pral4135g00053 | 417 | CDD | RRM2_PUB1 | 138 | 217 | - | - | |
Pral4135g00053 | 417 | SMART | rrm2_1 | 140 | 213 | IPR003954 | GO:0003676 | |
Pral4135g00053 | 417 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 262 | 326 | IPR000504 | GO:0003723 | |
Pral4135g00053 | 417 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | IPR000504 | GO:0003723 | |
Pral4135g00053 | 417 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 211 | IPR000504 | GO:0003723 | |
Pral4135g00053 | 417 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | IPR000504 | GO:0003723 | |
Pral4135g00053 | 417 | MobiDBLite | consensus disorder prediction | 217 | 259 | - | - | |
Pral4135g00053 | 417 | SUPERFAMILY | RNA-binding domain, RBD | 249 | 344 | IPR035979 | GO:0003676 | |
Pral4135g00053 | 417 | FunFam | Oligouridylate-binding protein 1C | 237 | 339 | - | - | |
Pral4135g00053 | 417 | SMART | rrm1_1 | 261 | 331 | IPR000504 | GO:0003723 | |
Pral4135g00053 | 417 | SMART | rrm1_1 | 55 | 124 | IPR000504 | GO:0003723 | |
Pral4135g00053 | 417 | SMART | rrm1_1 | 140 | 213 | IPR000504 | GO:0003723 | |
Pral4135g00053 | 417 | FunFam | oligouridylate-binding protein 1B-like isoform X2 | 1 | 136 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral4135g00053 | Pral-Chr4135 | 485921 | 492109 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral4135g00053 | 55 | 328 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 27.660 | 1.04e-25 | 107 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral4135g00053 | K13201 | - | qsa:O6P43_018428 | 743.806 |