Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4135g00033 ATGGCTTCTGAGACTGATAATCGTATTAAGAGGAAAGCGAAGCCAGTTGAAGCCATGACAAATGTGCCTCTTAGTAAAGCAGCATGGACGCCAGAAGAAGATAAGAAACTAGCGGAAGTCATTGCAGTTCATGGGGCAAAAAGATGGAAGTCCATTGCATCGAAAGCAGCTCTTAATCGGTGTGGGAAGAGTTGCAGATTGAGATGGTTGAACTATCTCAGACCCAACATCAAGAGGGGAAACATATCAGACCAAGAAGAGGATTTGATTCTTCGGCTTCATAAACTCTTAGGAAACAGGTGGGCTTTAATCGCTGGGAGGCTACCAGGCCGAACAGATAATGAGATAAAGAACTATTGGAATTCTCATTTGAGCAAGAAGATAAAGCAGAGGGAGAAGCACTCAAGTGGGAGTTCAACCAAAGAGAAACAAGAGGTGGCGGCCGAGCAGAAGATTCCTGACGAAGCTGAGGTAATCAGAGAAGAGGTTTCCACTGAGGAAGCTGAAGACTCATCATCAAAACCCAGCTTTGATGTGGACAGCTTTTTCGATTTTTCTGTAGAGGAAGGTCCATTGAATCTGGAGTGGGTTAGCCAGTTCCTTGAACTTGATGAAACAAATCTTGGACTCTTCTCACAATAA 642 0.4408 MASETDNRIKRKAKPVEAMTNVPLSKAAWTPEEDKKLAEVIAVHGAKRWKSIASKAALNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWALIAGRLPGRTDNEIKNYWNSHLSKKIKQREKHSSGSSTKEKQEVAAEQKIPDEAEVIREEVSTEEAEDSSSKPSFDVDSFFDFSVEEGPLNLEWVSQFLELDETNLGLFSQ 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4135g00033 213 Gene3D - 27 78 - -
Pral4135g00033 213 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
Pral4135g00033 213 Pfam Myb-like DNA-binding domain 79 124 IPR001005 -
Pral4135g00033 213 SMART sant 78 126 IPR001005 -
Pral4135g00033 213 SMART sant 25 75 IPR001005 -
Pral4135g00033 213 CDD SANT 28 73 IPR001005 -
Pral4135g00033 213 CDD SANT 83 124 IPR001005 -
Pral4135g00033 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Pral4135g00033 213 Gene3D - 83 156 - -
Pral4135g00033 213 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Pral4135g00033 213 MobiDBLite consensus disorder prediction 127 174 - -
Pral4135g00033 213 MobiDBLite consensus disorder prediction 127 177 - -
Pral4135g00033 213 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Pral4135g00033 213 FunFam MYB-related transcription factor 25 78 - -
Pral4135g00033 213 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Pral4135g00033 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Pral4135g00033 213 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 20 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4135g00033 Pral-Chr4135 271300 272700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4135g00033 1 190 MYB Transcription Factor Family AT3G13540 45.455 2.41e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4135g00033 Myb_DNA-binding 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4135g00033 K09422 - cave:132188282 265.774