Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4135g00031 ATGGGAAGGAAGCCTTGCTGTGCAAAGGAAGGTTTGAATAGAGGAGCTTGGACTGCTGCTGAAGACAAGATTCTGACTGAATACATCAAGATTCATGGTGAAGGCAAATGGCGACACCTTCCCAAAAGAGCAGGTCTGAAGAGATGTGGGAAGAGTTGTAGGCTGAGATGGTTAAATTATCTAAGACCTGATATCAAACGAGGAAATATTACTGATGACGAAGAGGATCTCATTATCAGGCTTCACACTCTTCTTGGAAATAGGTGGTCTTTGATAGCTGGAAGACTGCCGGGACGAACAGACAATGAGATAAAGAATTATTGGAACACCAACATCGGAAAGAGGCTTCAAAATGGTAACTCAAAATTCTTCACTACCTCAAATGGCGTTGAACCCGGCTCCTCGAGTTTAGCCGGGCAAGACTCCGACCCGGATCCAGAGTTTGACATAAAACCCCCACAAAAAACGGCTGCTCCATGCCCGATTCCACCCAAAGCAACAAGGTGCACCAATGTGATACTTAGCCAAGAACTCCAACCTCGTAATCACACGAACGTTACCTGCGATGATGAGGAAACAATGGACGCTCCACCTTTCGTGGATTCCGAGGGAATCGTCACAAACAACCTGTTGGATTTCATGGTGGATTTTGAGATCGACGAGGGTGTATTTTCAGATCTTCTGAATACGGACATACCAGAACCATCTTGTTTTGAGAATAAAGTTGTGGCTGTGGAAGAAGCAGACAGTAGCGCCGCCAGCACCAGTGATGAACAAGGTTGTTATTATCATTTGTCTCCTCCGACGATTTCTAATAATGAAACCTGCTTGAATAATGTTTCCGATGATTCCATATTGCATAGTCCTGAGGATTTCCAATCAATGTCGGCTCTGATGGAGACGATGAATTCGATTGGCTTTGAAATCTTCTAA 933 0.4448 MGRKPCCAKEGLNRGAWTAAEDKILTEYIKIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITDDEEDLIIRLHTLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGKRLQNGNSKFFTTSNGVEPGSSSLAGQDSDPDPEFDIKPPQKTAAPCPIPPKATRCTNVILSQELQPRNHTNVTCDDEETMDAPPFVDSEGIVTNNLLDFMVDFEIDEGVFSDLLNTDIPEPSCFENKVVAVEEADSSAASTSDEQGCYYHLSPPTISNNETCLNNVSDDSILHSPEDFQSMSALMETMNSIGFEIF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4135g00031 310 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral4135g00031 310 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pral4135g00031 310 CDD SANT 16 61 IPR001005 -
Pral4135g00031 310 SMART sant 66 114 IPR001005 -
Pral4135g00031 310 SMART sant 13 63 IPR001005 -
Pral4135g00031 310 Gene3D - 69 130 - -
Pral4135g00031 310 MobiDBLite consensus disorder prediction 124 147 - -
Pral4135g00031 310 Gene3D - 14 66 - -
Pral4135g00031 310 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 153 - -
Pral4135g00031 310 CDD SANT 71 112 IPR001005 -
Pral4135g00031 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral4135g00031 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral4135g00031 310 FunFam MYB-related transcription factor 13 66 - -
Pral4135g00031 310 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral4135g00031 310 MobiDBLite consensus disorder prediction 124 141 - -
Pral4135g00031 310 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral4135g00031 310 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4135g00031 Pral-Chr4135 241980 243471 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4135g00031 1 160 MYB Transcription Factor Family AT1G35515 56.250 6.19e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4135g00031 Myb_DNA-binding 4.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4135g00031 K09422 - qsa:O6P43_018371 285.419