Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4135g00030 ATGGCTTCTGAGACTGATGGTTGTACTAAGAGGAAAGTGAAGGCAGCTGAATCCATGAGCAAAGCACCTTGGACACCTGAAGAAGATAGGAAGCTTGCTGAGGTTACTGCGGTTTATGGGGCAAAAAGGTGGAAGTCCATTGCAGTCAAAGCAGGCCTCAATCGTTGCGGAAAGAGTTGTAGGTTAAGGTGGATGAATTATCTCAGGCCAAATATCAAGCGGGGAAACATATCAGACGAAGAAGAGGATTTGATAATTCGGCTTCACAAACTCCTCGGAAATAGGTGGGCTTTGATCGCCAGGAGACTTCCAGGTCGAACAGATAATGAGATAAAGAACTACTGGAATTCTCATTTGAGCAAGAAGCTTAAGCAGAGGGAGAAGCACCCAAGTGGGAGTTCATCCAGAGAAGAGAACCAAAAGATGGTCGTAGAACAGAAGATTCCTGAAGAAGCTAAGCTAATTAGAGAACAGGTTTCCCCTCAGGAAGCTGTAGACTCGTCATCAAAACCCAAGTTTGATATTGATGGGGTCTTTGATTTCTCAGAAGAAGGTCCCTTGAATCTGGAGTGGGTTAGCCGGTTCCTTGAACTCGATGATAAAACCTTGGGACTCTTTTCACAATACTAA 630 0.446 MASETDGCTKRKVKAAESMSKAPWTPEEDRKLAEVTAVYGAKRWKSIAVKAGLNRCGKSCRLRWMNYLRPNIKRGNISDEEEDLIIRLHKLLGNRWALIARRLPGRTDNEIKNYWNSHLSKKLKQREKHPSGSSSREENQKMVVEQKIPEEAKLIREQVSPQEAVDSSSKPKFDIDGVFDFSEEGPLNLEWVSRFLELDDKTLGLFSQY 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4135g00030 209 CDD SANT 78 119 IPR001005 -
Pral4135g00030 209 Pfam Myb-like DNA-binding domain 23 68 IPR001005 -
Pral4135g00030 209 Pfam Myb-like DNA-binding domain 74 119 IPR001005 -
Pral4135g00030 209 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 147 - -
Pral4135g00030 209 FunFam MYB transcription factor 75 132 - -
Pral4135g00030 209 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Pral4135g00030 209 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Pral4135g00030 209 CDD SANT 23 68 IPR001005 -
Pral4135g00030 209 Gene3D - 77 150 - -
Pral4135g00030 209 MobiDBLite consensus disorder prediction 121 142 - -
Pral4135g00030 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Pral4135g00030 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Pral4135g00030 209 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Pral4135g00030 209 SMART sant 73 121 IPR001005 -
Pral4135g00030 209 SMART sant 20 70 IPR001005 -
Pral4135g00030 209 FunFam MYB-related transcription factor 20 73 - -
Pral4135g00030 209 MobiDBLite consensus disorder prediction 1 23 - -
Pral4135g00030 209 Gene3D - 21 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4135g00030 Pral-Chr4135 232305 234891 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4135g00030 21 186 MYB Transcription Factor Family AT5G40330 48.795 2.50e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4135g00030 Myb_DNA-binding 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4135g00030 K09422 - cave:132188282 253.062