Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4135g00025 ATGGGAAGGAGTCCTTGCTGCGCCAAGGAAGGTTTGAATAGAGGAGCTTGGACAGCTATTGAAGACAAGAAGCTCATTCACTACATTAAGACTCACGGCGAAGGAAAATGGAGACACCTTCCCAAGCGAGCAGGGCTGAAGAGGTGTGGGAAGAGTTGTAGGCTGAGATGGCTGAATTATCTGAGACCTGGTATCAAAAGAGGAAATATTACCCGTGACGAAGAAGATCTCATCATCAGACTTCACAAACTTCTCGGCAACAGGTGGTCTTTGATAGCTGGGCGACTGCCAGGACGAACAGACAATGAGATAAAGAATTATTGGAACACCAACATCGGAAAGAAGGTTCAAAATGTTAATTCAAAAACAAAGTCGTCTCCTACTTCAGGCGTCTCGCCAAGCAAAGCCCGACAGGACAAGGACATAACAAAGTCGGACCCGGACCCAAAAGCCCCACAAAAAACGAGTAGTTCATGCGTGATTCGAACCAAAGCAACAAGGTGCACCAGAGTTATAGTGAGCAAAGAAATCCAACCACTAATGGCCGCACCATATTTGACCACTACTCATTATCGTCATGGTGGGGACATGAACGTTAAGTGTGGTGATCAAGACAAAATAGTAGAGGAACCATTTCCACCTTTTGCGGGGTCAGAAGTGGCAAATGATAACAATAATGATAATACAAACAACAATGAGCTGGATTTCATCGAGGATTTTGAAATGGACGAGGGTTTCTTTTCGGATCTTCTGAATTTCGATATTTCCGAACCATCGTCTTGTTTTGAGAATAATGAAGTTGTGCAAGAAGCTACTGATGAACGCCATGAGCAGTGA 837 0.4432 MGRSPCCAKEGLNRGAWTAIEDKKLIHYIKTHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITRDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGKKVQNVNSKTKSSPTSGVSPSKARQDKDITKSDPDPKAPQKTSSSCVIRTKATRCTRVIVSKEIQPLMAAPYLTTTHYRHGGDMNVKCGDQDKIVEEPFPPFAGSEVANDNNNDNTNNNELDFIEDFEMDEGFFSDLLNFDISEPSSCFENNEVVQEATDERHEQ 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4135g00025 278 MobiDBLite consensus disorder prediction 118 159 - -
Pral4135g00025 278 FunFam Transcription factor TT2 70 142 - -
Pral4135g00025 278 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pral4135g00025 278 CDD SANT 16 61 IPR001005 -
Pral4135g00025 278 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral4135g00025 278 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pral4135g00025 278 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
Pral4135g00025 278 Gene3D - 70 145 - -
Pral4135g00025 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral4135g00025 278 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral4135g00025 278 Gene3D - 14 66 - -
Pral4135g00025 278 CDD SANT 71 112 IPR001005 -
Pral4135g00025 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral4135g00025 278 SMART sant 13 63 IPR001005 -
Pral4135g00025 278 SMART sant 66 114 IPR001005 -
Pral4135g00025 278 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral4135g00025 278 MobiDBLite consensus disorder prediction 118 136 - -
Pral4135g00025 278 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4135g00025 Pral-Chr4135 206107 208188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4135g00025 1 179 MYB Transcription Factor Family AT2G16720 51.596 4.46e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4135g00025 Myb_DNA-binding 5.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4135g00025 K09422 - qsa:O6P43_027567 280.796