Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4134g00002 ATGGACCCGCGAACAAATTGTAATCCTCGCACTGTTGAAGAGGTTTTCAGGGATTTCAAAGGCCGAAGAGCTGGAATGATTAAAGCCCTTACAACGGATGTTGAAGATTTTTACAGCCAATGTGACCCTGAGAAGGAGAATTTGTGCTTGTATGGACTCCCTAGTGAGCAGTGGGAAGTGAACCTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCCGAGCCTGTTCTGGGAATTAATTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTCGCAGTCCATAGTGATGCATGGTTACTTTCCGTGGCCTTCTATTTTGGAGCCAGATTTGGTTTTGATAGAGCTGACAGAAAACGACTTTTCAATATGATCAATGAACTGCCAACAATTTTTGAAGTTGTTACCGGTACAGCAAAGAAAGAAGTGAAGGAGAAGTCTTCAAATCAAAGCGGCAGCAAATCTAAGTCTGGCTCTAAGGTGAGAGCCTCAGAAAGCCAGGGTAGACAATCGAAGATGTTGCAACCCAAAGATGAGGATGAAGTTCCAGACGAGCAAGATGAAGATGATGAACATGGAGATACCTTGTGTGGGGCATGCGGTGAGAATTACGGTACTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATTACCCCTGCAAGGGCGGAGCATATCAAGCAATACAAATGCCCATCATGCAGTAACAAGAGAGCTCGGTGCTGA 759 0.4506 MDPRTNCNPRTVEEVFRDFKGRRAGMIKALTTDVEDFYSQCDPEKENLCLYGLPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDRADRKRLFNMINELPTIFEVVTGTAKKEVKEKSSNQSGSKSKSGSKVRASESQGRQSKMLQPKDEDEVPDEQDEDDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARC 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4134g00002 252 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Pral4134g00002 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pral4134g00002 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Pral4134g00002 252 PANTHER CPG BINDING PROTEIN 8 251 IPR045104 GO:0006355|GO:0042393
Pral4134g00002 252 MobiDBLite consensus disorder prediction 144 192 - -
Pral4134g00002 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Pral4134g00002 252 MobiDBLite consensus disorder prediction 152 173 - -
Pral4134g00002 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Pral4134g00002 252 Pfam PHD-finger 199 248 IPR019787 -
Pral4134g00002 252 CDD PHD_AL_plant 198 248 IPR044104 -
Pral4134g00002 252 FunFam PHD finger alfin-like protein 191 247 - -
Pral4134g00002 252 SMART PHD_3 198 246 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4134g00002 Pral-Chr4134 298 3929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4134g00002 8 251 Alfin-like Transcription Factor Family AT3G42790 76.639 8.72e-127 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pral4134g00002 Alfin 3e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4134g00002 K26274 - gmx:100794662 441.81