Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4134g00001 ATGGACCCGCGAACAAATTGTAATCCTCGCACTGTTGAAGAGGTTTTCAGGGATTTCAAAGGCCGAAGAGCTGGAATGATTAAAGCCCTTACAACGGATGTTGAAGATTTTTACAGCCAATGTGACCCTGAGAAGGAGAATTTGTGCTTGTATGGACTCCCTAGTGAGCAGTGGGAAGTGAACCTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCCGAGCCTGTTCTGGGAATTAATTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTCGCAGTCCATAGTGATGCATGGTTACTTTCCGTGGCCTTCTATTTTGGAGCCAGATTTGGTTTTGATAGAGCTGACAGAAAACGACTTTTCAATATGATCAATGAACTGCCAACAATTTTTGAAGTTGTTACCGGTACAGCAAAGAAAGAAGTGAAGGAGAAGTCTTCAAATCAAAGCGGCAGCAAATCTAAGTCTGGCTCTAAGAGAGCCTCAGAAAGCCAGGGTAGACAATCGAAGATGTTGCAACCCAAAGATGAGGATGAAGTTCCAGACGAGCAAGATGAAGATGATGAACATGGAGATACCTTGTGTGGGGCATGCGGTGAGAATTACGGTACTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATTACCCCTGCAAGGGCGGAGCATATCAAGCAATACAAATGCCCATCATGCAGTAACAAGAGAGCTCGGTGCTGA 756 0.4497 MDPRTNCNPRTVEEVFRDFKGRRAGMIKALTTDVEDFYSQCDPEKENLCLYGLPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDRADRKRLFNMINELPTIFEVVTGTAKKEVKEKSSNQSGSKSKSGSKRASESQGRQSKMLQPKDEDEVPDEQDEDDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARC 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4134g00001 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Pral4134g00001 251 MobiDBLite consensus disorder prediction 152 172 - -
Pral4134g00001 251 CDD PHD_AL_plant 197 247 IPR044104 -
Pral4134g00001 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pral4134g00001 251 MobiDBLite consensus disorder prediction 144 191 - -
Pral4134g00001 251 FunFam PHD finger alfin-like protein 190 246 - -
Pral4134g00001 251 SUPERFAMILY FYVE/PHD zinc finger 186 248 IPR011011 -
Pral4134g00001 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Pral4134g00001 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Pral4134g00001 251 PANTHER CPG BINDING PROTEIN 8 250 IPR045104 GO:0006355|GO:0042393
Pral4134g00001 251 SMART PHD_3 197 245 IPR001965 -
Pral4134g00001 251 Pfam PHD-finger 198 247 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4134g00001 Pral-Chr4134 298 3929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4134g00001 8 250 Alfin-like Transcription Factor Family AT3G42790 75.720 1.24e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pral4134g00001 Alfin 2.9e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4134g00001 K26274 - gmx:100170700 431.409