Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4133g00027 ATGAAGGGTTCATGTAAGAAAGATTTTGGCCTACGTTCTGCTCATTCAACATCCCCTGATTTTCTTGGATGCTCATCATGGAAAACTTCATCTGGATTTCATGGACAAGAATCACCTATGTCCAAAGGTTTGAGCTTAAACATGGGAGTTCTTCCACAACAATGTCTTAATACTAAGCTGTCTAGTTTTCCATTTCAAGAACAACTCTCATCTTCAACTCAACCAAATGAGCAATCTTATCCTAAAGGTGTTTCGGCAAATTCAGGTCAGTTTTCTATGCAATATAGCAGTTCTTCTGAGGGAATGTCCTTGGGAGGTCTCATCAGGTCATCTGTGGGGAGGCAGGATTTTGCCTTCGCTTCTCCATTTCTGGATCATAACAAATCAACTATTCATCATGCTCAACTAATGGGAATGGCTCCTCTTCGACTTCCACTTCCACTTGACTTCACTGAAGAACCCATATTTGTGAATGCAAAACAATATCATGCAATTCTGAGGCGAAGACAGCATCGATCAAAACTCGAATCACAGAACAAACTCAGCAAAACGCGGAAACCATATCTTCACGAGTCTCGGCATCTACATGCGTTGAAGAGAGCCAGAGGTTCCGGTGGACGCTTTCTTAACACCAAGAAGCTTCAAGAATCATCAGAACTACCTTCAGCAAGTCAATATGAAACAGAACCTGAGTTTCTTGGGTTAGAAAATTGCAGAGGCAGCGCACCCACCTCCACTTGTTCTGACAGCGACAACATATTACAGCAACAACATGAATCAAATTTGAGGTTGTCCAGAAGATATCCTTCTAATGTTGGAATCAATGTGCATAGTTTCTCAGTTGACCATATGAGTGGTGATGAGAATCAGCATGGGTTGTCTGTCTTCATGTGA 894 0.4183 MKGSCKKDFGLRSAHSTSPDFLGCSSWKTSSGFHGQESPMSKGLSLNMGVLPQQCLNTKLSSFPFQEQLSSSTQPNEQSYPKGVSANSGQFSMQYSSSSEGMSLGGLIRSSVGRQDFAFASPFLDHNKSTIHHAQLMGMAPLRLPLPLDFTEEPIFVNAKQYHAILRRRQHRSKLESQNKLSKTRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSELPSASQYETEPEFLGLENCRGSAPTSTCSDSDNILQQQHESNLRLSRRYPSNVGINVHSFSVDHMSGDENQHGLSVFM 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4133g00027 297 ProSiteProfiles NF-YA/HAP2 family profile. 151 211 IPR001289 GO:0003700|GO:0006355
Pral4133g00027 297 Gene3D - 151 212 - -
Pral4133g00027 297 SMART cbf3 150 211 IPR001289 GO:0003700|GO:0006355
Pral4133g00027 297 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 153 208 IPR001289 GO:0003700|GO:0006355
Pral4133g00027 297 PRINTS CCAAT-binding transcription factor subunit B signature 154 176 IPR001289 GO:0003700|GO:0006355
Pral4133g00027 297 PRINTS CCAAT-binding transcription factor subunit B signature 185 208 IPR001289 GO:0003700|GO:0006355
Pral4133g00027 297 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 56 265 IPR001289 GO:0003700|GO:0006355
Pral4133g00027 297 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4133g00027 Pral-Chr4133 370568 374250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4133g00027 25 225 CCAAT-HAP2 Transcription Factor Family AT1G54160 43.089 3.11e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral4133g00027 CBFB_NFYA 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4133g00027 K08064 - gmx:100500765 255.373