Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4133g00024 ATGGGAGTTCTTCCACAACAATGTCTTAATACTAAGCTGTCTAGTTTTCCATTTCAAGAACAACTCTCATCTTCAACTCAACCAAATGAGCAATCTTATCCTAAAGGTGTTTCGGCAAATTCAGGTCAGTTTTCTATGCAATATAGCAGTTCTTCTGAGGGAATGTCCTTGGGAGGTCTCATCAGGTCATCTGTGGGGAGGCAGGATTTTGCCTTCGCTTCTCCATTTCTGGATCATAACAAATCAACTATTCATCATGCTCAACTAATGGGAATGGCTCCTCTTCGACTTCCACTTCCACTTGACTTCACTGAAGAACCCATATTTGTGAATGCAAAACAATATCATGCAATTCTGAGGCGAAGACAGCATCGATCAAAACTCGAATCACAGAACAAACTCAGCAAAACGCGGAAACCATATCTTCACGAGTCTCGGCATCTACATGCGTTGAAGAGAGCCAGAGGTTCCGGTGGACGCTTTCTTAACACCAAGAAGCTTCAAGAATCATCAGAACTACCTTCAGCAAGTCAATATGAAACAGAACCTGAGTTTCTTGGGTTAGAAAATTGCAGAGGCAGCGCACCCACCTCCACTTGTTCTGACAGCGACAACATATTACAGCAACAACATGAATCAAATTTGAGGTTGTCCAGAAGATATCCTTCTAATGTTGGAATCAATGTGCATAGTTTCTCAGTTGACCATATGAGTGGTGATGAGAATCAGCATGGGTTGTCTGTCTTCATGTGA 753 0.4223 MGVLPQQCLNTKLSSFPFQEQLSSSTQPNEQSYPKGVSANSGQFSMQYSSSSEGMSLGGLIRSSVGRQDFAFASPFLDHNKSTIHHAQLMGMAPLRLPLPLDFTEEPIFVNAKQYHAILRRRQHRSKLESQNKLSKTRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSELPSASQYETEPEFLGLENCRGSAPTSTCSDSDNILQQQHESNLRLSRRYPSNVGINVHSFSVDHMSGDENQHGLSVFM 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4133g00024 250 SMART cbf3 103 164 IPR001289 GO:0003700|GO:0006355
Pral4133g00024 250 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 106 161 IPR001289 GO:0003700|GO:0006355
Pral4133g00024 250 Gene3D - 104 165 - -
Pral4133g00024 250 ProSiteProfiles NF-YA/HAP2 family profile. 104 164 IPR001289 GO:0003700|GO:0006355
Pral4133g00024 250 PRINTS CCAAT-binding transcription factor subunit B signature 138 161 IPR001289 GO:0003700|GO:0006355
Pral4133g00024 250 PRINTS CCAAT-binding transcription factor subunit B signature 107 129 IPR001289 GO:0003700|GO:0006355
Pral4133g00024 250 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 219 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4133g00024 Pral-Chr4133 370568 375644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4133g00024 71 178 CCAAT-HAP2 Transcription Factor Family AT1G54160 66.972 4.61e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral4133g00024 CBFB_NFYA 9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4133g00024 K08064 - gmx:100500765 223.787