Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4127g00004 ATGGAGCACAAGCACGTTTTGCTGTCAGCATTGGGTGTTGGGGTTGGTCTCGGAGCAAGCCTTGGGTTGAGCTCAGGGCTTGGAGGGATTCGCGAGTCTGGTGATGAGCTTTATGGTGAACAGATTGAGCAGGAGCTTTTGAGGCAGGTGATCGATGGAAAGGAATGCAAAGAAACTTTTCAAGAGTTTCCGTATTACTTAAGTGAAAGAACTCGAGAGTTATTGAAAAGTGCTGCATCTGTTCATTTAAGGCAACTTTTCTTTTCCAAGCACACTCGGAACCTTTCACCAGCAAGCAGGGCAATTCTGCTTTCTGGACCCGCGGAATTTTACGTACAAACGCTTGCCAGGGCTTTAGCACATCATTTTGAATCAAAGTTGCTGCTACTAGATGTAGCTGACTTCTCTTCCAAGATACAAAGCAAATATGGATGTGTAAGAAAAGAATCAGGAGTGTCGGATTTGCTTGGTTCTGTCCTCTCTTCAAATGGCAAAACTAAAGGCACTTTTCAGAAACACAGTAATGCTACTGGAAGTCCCAATATCACTTCAAATATTCGTGCGACTACTGCTTCCCAATCTGCTCCGGCAAATTCTGCTAAGCAGAAAAGTAGCTTGTGTATCAATGAAAAACTCTTTATGCGGTTGCTTTACAAGGTATTGGTTTCTGTGTCAGAAAAGAGTTCCATCATCTTGTACATTAGGGATGTTGACAAGATTTTCCTCCAATCAGAGCAACTGTATAAGTTGTTTAATGATATGCTGGGGGAAATTCGAGGGCCAGTGCTGATACTCGGTTCCAAGATCGCTGTCCAAACCAAAAAACCTGGAAATCTCCCACCATACATAGTGTTGTCTCGCAAAGAGAATAAATGTTCAAAAGTTGATGAAAGGCTTGTAGCATTGTTCCCTTACATCATTAAGATCAAGCCACCAGAAGATGAAAATGATCTTAAGGAATGGAAAGCCCAGCTGGAAGAGAACAAGAAAACAATTGAGTCTCAAGATAACAGAAACCACATTGCTGATGTACTGGCAGAAAATGATGTTGAATGTAGAGACTTGAATTCAATTAGCCATGAGGACACAAAGATACTAAGTAAACATATCGAAGAAATTGTGTTATCCGCAATATCTTACTACTTGATGAATATCAAGGATCCAGAATATCGGAATCAAAAGCTTGTAATATCATCTGAAAGCTTGTGCCATGGTTTGGATCTATTTCGCAAAAAGGAAAGCAGGGACGAGGGAAAGAAGCAAGGGACTAGTGGAAAGAAGCAAGAAACTAGGGGAAAAAAGGAAGTTCGTCCAGACAATCAGCATGAGGGGCATATAAGAGAAGAACTTATCCCTGCGAATGAGATAGGAGTTACATTCTCAGATATTGGTGCTTTAGAGGAAATTAAGGAATCACTACAAGAGCTAGTCATGCTTCCACTTCGAAGACCAGAGCTCTTCAAAAGTGGGCTTCTTAAGCCTTGTCGAGGCATATTGCTCTTTGGACCTCCAGGTACTGGAAAAACAATGCTTGCAAAGGCAATTGCCAATGAAGCAGGAGCTAGTTTCATCAATGTCTCCATGTCTACCATCACATCAAAGTGCTTTGGAGAATCTGAGAAGCATGTCCGTGCTCTGTTCTCTCTCGCTGCAAAGGTTTCTCCAAGTATCATTTTCATTGATGAGGTTGATAGCTTGCTCGGGAGTCGAGCAAGACATGGAGAGCATGAGGTTACGAGGAGGATTAAGAATGAATTCATGACCCATTGGGATGGTCTATTGACAAAACAAGATGAGAGAATTCTGGTTCTTGCTGCAACCAATAGGCCATTCGACCTTGATGATGCAATCATAAGGCGATTTGAGCGAAGAATCATGGTTGGTCTTCCATCAGTGGAGGCTAGGGAGATTATCTTGAAAACCCTTCTAAGTAAGGAAAATACTGAAAATTTAGACTTGAAGGAGATTGCGGTCATGACAGAGGGGTATACTGGAAGCGACCTCAAGAATTTGTGCACTGCTGCCGCTTATCGACCTGTTAGGGAGCTAATAAAACAGGAGAAGTTGGAGGCTTTGGAGAAGAATAAAGAAGAGGCTGAAGGCCAAAACTCAAAAGCTGCTTCAAGTGCCAAAGAGGATACAAAAGAGAAGGACAAGAGTGAGAAAGATGCTGAAGGTCAAAGCTCAGAAGCTGCTTCTAGTGCTAAGGAGGACAAAGAAGAGCCCGTGATTACCTTGAGGCCTATAAATATGGAAGACATGATTCAGGCTAAGAATCAGGTTCCTGCAAGTTTTGATGCTTGCGGATTAATTATGCATCAGTTGAAGCAGTGGAATGAGCTGTATGGAGAACGAGGTTTGCGGTAG 2367 0.4246 MEHKHVLLSALGVGVGLGASLGLSSGLGGIRESGDELYGEQIEQELLRQVIDGKECKETFQEFPYYLSERTRELLKSAASVHLRQLFFSKHTRNLSPASRAILLSGPAEFYVQTLARALAHHFESKLLLLDVADFSSKIQSKYGCVRKESGVSDLLGSVLSSNGKTKGTFQKHSNATGSPNITSNIRATTASQSAPANSAKQKSSLCINEKLFMRLLYKVLVSVSEKSSIILYIRDVDKIFLQSEQLYKLFNDMLGEIRGPVLILGSKIAVQTKKPGNLPPYIVLSRKENKCSKVDERLVALFPYIIKIKPPEDENDLKEWKAQLEENKKTIESQDNRNHIADVLAENDVECRDLNSISHEDTKILSKHIEEIVLSAISYYLMNIKDPEYRNQKLVISSESLCHGLDLFRKKESRDEGKKQGTSGKKQETRGKKEVRPDNQHEGHIREELIPANEIGVTFSDIGALEEIKESLQELVMLPLRRPELFKSGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKCFGESEKHVRALFSLAAKVSPSIIFIDEVDSLLGSRARHGEHEVTRRIKNEFMTHWDGLLTKQDERILVLAATNRPFDLDDAIIRRFERRIMVGLPSVEAREIILKTLLSKENTENLDLKEIAVMTEGYTGSDLKNLCTAAAYRPVRELIKQEKLEALEKNKEEAEGQNSKAASSAKEDTKEKDKSEKDAEGQSSEAASSAKEDKEEPVITLRPINMEDMIQAKNQVPASFDACGLIMHQLKQWNELYGERGLR 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4127g00004 788 Gene3D - 631 762 - -
Pral4127g00004 788 Pfam ATPase family associated with various cellular activities (AAA) 498 628 IPR003959 GO:0005524|GO:0016887
Pral4127g00004 788 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 457 632 - -
Pral4127g00004 788 Coils Coil 318 338 - -
Pral4127g00004 788 Gene3D - 458 630 IPR027417 -
Pral4127g00004 788 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 41 786 - -
Pral4127g00004 788 MobiDBLite consensus disorder prediction 694 743 - -
Pral4127g00004 788 SMART AAA_5 494 631 IPR003593 GO:0016887
Pral4127g00004 788 MobiDBLite consensus disorder prediction 413 444 - -
Pral4127g00004 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 679 IPR027417 -
Pral4127g00004 788 Pfam AAA+ lid domain 650 686 IPR041569 -
Pral4127g00004 788 MobiDBLite consensus disorder prediction 709 743 - -
Pral4127g00004 788 Coils Coil 784 788 - -
Pral4127g00004 788 Coils Coil 682 709 - -
Pral4127g00004 788 ProSitePatterns AAA-protein family signature. 601 620 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4127g00004 Pral-Chr4127 24485 51222 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4127g00004 415 689 Calmodulin-binding Proteins AT3G56690 37.276 2.84e-43 167