Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4127g00003 ATGGAGCACAAGCACGTTTTGCTGTCAGCATTGGGTGTTGGGGTTGGTCTCGGAGCAAGCCTTGGGTTGAGCTCAGGGCTTGGAGGGAATCACGAGTCTGGTGATGAGCTTTATGGTGAACAGATTGAGCAGGAGCTTTTGAGGCAGGTGATCGATGGAAAGGAATGCAAAGAAACTTTTCAAGAGTTTCCGTATTACTTAAGTGAAAGAACTCGAGAGTTATTGAAAAGTGCTGCATCTGTTCATTTAAGGCAACTTTTCTTTTCCAAGCACACTTGGAACCTTTCACCAGCAAGCAGGGCAATTCTGCTTTCTGGACCCGCGGAATTTTACGTACAAACGCTTGCCAGGGCTTTAGCACATCATTTTGAATCAAAGTTGCTGCTCCTAGATGTAGCTGATTTCTCTTCCAAGATACAAAGCAAATATGGATGTGTAAGAAAAGAATCATCTTCTAAAATTTCCTTATCTGAGGTGGCTTCCCAGGGAGTGTCGGATTTGCTTGGTTCTGTCCTCTCTTCAAATGGCAAAACTAAAGGCACTTTTCAGAAACACAGTAATGCTACTGGAAGTCCCAATATCACTTCAAATATTCGTGCGACTACTGCTTCCCAATCTGCTCCGGCAAATTCTGCTAAGCAGAAAAGTAGCTTGTGTATCAATGAAAAACTCTTTATGCGGTTGCTTTACAAGGTATTGGTTTCTGTGTCAGAAAAGAGTTCCATCATCTTGTACATTAGGGATGTTGACAAGATTTTCCTCCAATCAGAGCAACTGTATAAGTTGTTTAATGATATGCTGGGGGAAATTCGAGGGCCAGTGCTGATACTCGGTTCCAAGATCGCTGTCCAAACCAAAAAACCTGGAAATCTCCCACCATACATAGTGTTGTCTCGCAAAGAGAATAAATGTTCAAAAGTTGATGAAAGGCTCGTAGCATTGTTCCCTTACATCATTAAGATCAAGCCACCAGAAGATGAAAATGATCTTAAGGAATGGAAAGCCCAGCTGGAAGAGAACAAGAAAACAATTGAGTCTCAAGATAACAGAAACCACATTGCTGATGTACTGGCAGAAAATGATGTTGAATGTAGAGACTTGAATTCAATTAGCCATGAGGACACAAAGATACTAAGTAAACATATCGAAGAAATTGTGTTATCCGCAATATCTTACTACTTGATGAATATCAAGGATCCAGAATATCGGAATCAAAAGCTTGTAATATCATCTGAAAGCTTGTGCCATGGTTTGGATCTATTTCGCAAAAAGGAAAGCAGGGACGAGGGAAAGAAGCAACAAACTAGGGGAAAAAAGGAAGTTCGTCCAGACAATCAGCATGAGGGGCATATAAGAGAAGAACTTATCCCTGCGAATGAGATAGGAGTTACATTCTCAGATATTGGTGCTTTAGAGGAAATTAAGGAATCACTACAAGAGCTAGTCATGCTTCCACTTCGAAGACCAGAGCTCTTCAAAAGTGGGCTTCTTAAGCCTTGTCGAGGCATATTGCTCTTTGGACCTCCAGGTACTGGAAAAACAATGCTTGCAAAGGCAATTGCCAATGAAGCAGGAGCTAGTTTCATCAATGTCTCCATGTCTACCATCACATCAAAGTGCTTTGGAGAATCTGAGAAGCATGTCCGTGCTCTGTTCTCTCTCGCTGCAAAGGTTTCTCCAACTATCATTTTCATTGATGAGGTTGATAGCTTGCTCGGGAGTCGAGCAAGACGTGGAGAGCATGAGGTTACGAGGAGGATTAAGAATGAATTCATGACCCATTGGGATGGTCTATTGACAAAACAAGATGAGAGAATTCTGGTTCTTGCTGCAACCAATAGGCCATTCGACCTTGATGATGCAATCATAAGGCGATTTGAGCGAAGAATCATGGTTGGTCTTCCATCAGTGGAGGCTAGGGAGATTATCTTGAAAACCCTTCTAAGTAAGGAAAATACTGAAAATTTAGACTTGAAGGAGATTGCAGTCATGACAGAGGGGTATACTGGAAGCGACCTCAAGAATTTGTGCACTGCTGCTGCTTATCGACCTGTTAGGGAGCTAATAAAACAGGAGAAGTTGGAGGCTTTGGAGAAGAATAAAGAAGAGGCTGAAGGCCAAAACTCAAAAGCTGCTTCAAGTGCCAAAGAGGATACAAAAGAGAAGGACAAGAGTGAGAAAGATGCTGAAGGTCAAAGCTCAGAAGCTGCTTCTAGTGCTAAGGAGGACAAAGAAGAGCCCGTGATTACCTTGAGGCCTATAAATATGGAAGACATGATTCAGGCTAAGAATCAGGTTCCTGCGAGTTTTGATGCTTGCGGATTAATTATGCATCAGTTGAAGCAGTGGAATGAGCTGTATGGAGAACGAGGTTCGCGGTAG 2382 0.424 MEHKHVLLSALGVGVGLGASLGLSSGLGGNHESGDELYGEQIEQELLRQVIDGKECKETFQEFPYYLSERTRELLKSAASVHLRQLFFSKHTWNLSPASRAILLSGPAEFYVQTLARALAHHFESKLLLLDVADFSSKIQSKYGCVRKESSSKISLSEVASQGVSDLLGSVLSSNGKTKGTFQKHSNATGSPNITSNIRATTASQSAPANSAKQKSSLCINEKLFMRLLYKVLVSVSEKSSIILYIRDVDKIFLQSEQLYKLFNDMLGEIRGPVLILGSKIAVQTKKPGNLPPYIVLSRKENKCSKVDERLVALFPYIIKIKPPEDENDLKEWKAQLEENKKTIESQDNRNHIADVLAENDVECRDLNSISHEDTKILSKHIEEIVLSAISYYLMNIKDPEYRNQKLVISSESLCHGLDLFRKKESRDEGKKQQTRGKKEVRPDNQHEGHIREELIPANEIGVTFSDIGALEEIKESLQELVMLPLRRPELFKSGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKCFGESEKHVRALFSLAAKVSPTIIFIDEVDSLLGSRARRGEHEVTRRIKNEFMTHWDGLLTKQDERILVLAATNRPFDLDDAIIRRFERRIMVGLPSVEAREIILKTLLSKENTENLDLKEIAVMTEGYTGSDLKNLCTAAAYRPVRELIKQEKLEALEKNKEEAEGQNSKAASSAKEDTKEKDKSEKDAEGQSSEAASSAKEDKEEPVITLRPINMEDMIQAKNQVPASFDACGLIMHQLKQWNELYGERGSR 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4127g00003 793 Coils Coil 330 350 - -
Pral4127g00003 793 Coils Coil 687 714 - -
Pral4127g00003 793 MobiDBLite consensus disorder prediction 425 449 - -
Pral4127g00003 793 Pfam ATPase family associated with various cellular activities (AAA) 503 633 IPR003959 GO:0005524|GO:0016887
Pral4127g00003 793 ProSitePatterns AAA-protein family signature. 606 625 IPR003960 GO:0005524|GO:0016887
Pral4127g00003 793 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 41 793 - -
Pral4127g00003 793 MobiDBLite consensus disorder prediction 699 752 - -
Pral4127g00003 793 Gene3D - 636 767 - -
Pral4127g00003 793 SMART AAA_5 499 636 IPR003593 GO:0016887
Pral4127g00003 793 Pfam AAA+ lid domain 655 691 IPR041569 -
Pral4127g00003 793 MobiDBLite consensus disorder prediction 714 751 - -
Pral4127g00003 793 Gene3D - 463 635 IPR027417 -
Pral4127g00003 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 684 IPR027417 -
Pral4127g00003 793 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 462 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4127g00003 Pral-Chr4127 1150 7194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4127g00003 463 694 Calmodulin-binding Proteins AT3G56690 40.254 2.35e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4127g00003 - - pcin:129285842 1188.71