LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4126g00005	ATGGAGCACAAGCACGTTTTGCTGTCAGCATTGGGTGTTGGGGTTGGTCTCGGAGCAAGCCTTGGGTTGAGCTCAGGGCTTGGAGGGAATCACGAGTCTGGTGATGAGCTTTATGGTGAACAGATTGAGCAGGAGCTTTTGAGGCAGGTGATCGATGGAAAGGAATGCAAAGAAACTTTTCAAGAGTTTCCGTCTTACTTGAGTGAAAGAACTCGAGAGTTATTGAAAAGTGCTGCATCTGTTCATTTAAGACAAACTTTCTTTTCCAAACACACTCGGAACCTTTCACCAGCAAGCAGGGCAATTCTGCTTTCGGGACCTGAAGAATTGTACCTACAAACGCTTGCCAAGGCTTTAGCACATCATTTTGAATCGAAGTTGCTGCTACTAGATGTACCTGACTTCTCTTTCAAGATACAGAGCAAATACGGATATGCAACAAAAGAATCATCTTCTAAACCGTCCTTATCTGAGGTGGCTTCCGAGAGAGTGTCTGGTTTGCTTGGTTCCTTTTCAGTCCTCTCTTCAAATGACAAAACTAAAGGCACTCTTGACAAACACGGTAAAGCTACTGAAAGTCCCAATATTAATTCAAAGCTTCACGGGACTCCTGGTTCCCAGTCTGCTCCAGCAAATTCTGTTCCCTCGAAGCAGAAAAGCAGCTTGTGTGTCAATGAAAAGCTCTTTATGCAGTTGCTTTTTAAGGTCTTGGTTTCTGTGTCAGAAAAGAGTTCCATCATTTTGTACATCAGGGATGTTGACAAGATTTTCCTCCAATCAGAGCAACTGTATAACTTGTTTCATGAAATGCTAGGGAGACTTCCAGGGCCAGTGCTGATTCTTGGTTCCAAGATCGCGAACATACCCAAAAAACCTGATCTCCCGCCATGGATGCTTCCGCCTCCAAAAGTGAATAAACGTTCAAAGGTTGATGAAAGGCTCGCAGCGTTATTCCCTTACATCATTAAGGTCAAACCACCAGAAGATGAAACCGATCTTGAAGATTGGAAAGCCCAACTGGAAGAGAACAAGAAAACAATTAAGTCTCAAGATAACAGGAACCACATCGCTGAAGTACTGGCAGCAAGTGATGTTGAATGTAGAGACTTGAATTCAATCAGCCATGACGACACAAAGATACTGAGTAAATATATTGAAGAAATTGTGGTATCTGCAATATCTCACTACTTAATGAATACCAAGGATCCAGAATATCGGAATGGAAAGCTTGTGATATCATCTGAGAGTTTGTGCCATGCTTTGGATCTATTTCGCAAAAAGAAAAGTAACAACGATGGAAAGAAGCAAGTGAAAAATGGAAAGAAGGATGTTCGTCCGGACAGTAAGCATGAGAGGCACATAAGAGATGAACTTATCCCCGCGAATGAGATAGGTGTCACATTCTCAGATATTGGTGCACTGGAGGAAGTTAAGGAATCACTACAAGAGCTAGTCATGCTTCCACTTCGAAGACCAGAGCTCTTCAAAAGTGGACTTCTTAAGCCTTGTCGAGGCATATTGCTCTTTGGACCTCCAGGTACTGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCAGGAGCTAGTTTCATCAATGTCTCCATGTCTACCATCACATCAATGTGGTTTGGAGAAGCTGAGAAGCATGTCCGTGCTCTGTTCTCTCTAGCTGCAAAGGTTTCTCCGACTATCATTTTCATTGATGAAGTTGATAGCTTGCTCGGGCGACGATCAAGATGTGGAGAGCATGAGGCTACGAGGAGGATTAAGAATGAATTCATGACCCATTGGGATGGTCTATTGACAAAACAACACGAGCGTATTCTAGTTCTTGCTGCCACCAATAGGCCATTTGACCTTGATGATGCAATCATAAGACGGTTTGAGCGAAGAGTCATGGTTGGTCTGCCATCTGTCGAGGCTAGGGAGATTATCTTGAAAACTCTACTGGCTAAGGAAAATACTGAAAACTTAGACCTCAAAAAGGTTGCAGTCATGACAGAGGGATATACTGGAAGCGACCTCAAGAATTTGTGCACTGCTGCTGCTTATCGACCTGTTAGGGAGCTCATAAAGCAGGAGAAATTGAAGGATATGGAAAAGAATAAGAAAGAGGCTGAAGGCCAAAGCTCCGAAGCTGCTTCAAGTGCCAAAGAGGATACAGAAGAACAAGGTAAGAATAAGAAAGATGCCGAAGGCCAAAGCTCACAAGCTGCTTCAAGTCCCAAAGAGGGCCCAAAAGAGCAGGACAAGAATAAGAAAGATGCTGAAGGCCAAAGCTCAGAAAGTGATAAGGAGGACAAAGAAGAGCCAGTAATTACCTTGAGGCCCATAAATATGGAAGACATGATTCAGGCTAAGAATCAGGTTCCTGCAAGTTTTGATGGTCACGGGGCGATTATGCATGAATTGAGGCAGTGGAATGAGCTGTATGGAGATCGAGGTTCTCTGTAG	2457	0.4347	MEHKHVLLSALGVGVGLGASLGLSSGLGGNHESGDELYGEQIEQELLRQVIDGKECKETFQEFPSYLSERTRELLKSAASVHLRQTFFSKHTRNLSPASRAILLSGPEELYLQTLAKALAHHFESKLLLLDVPDFSFKIQSKYGYATKESSSKPSLSEVASERVSGLLGSFSVLSSNDKTKGTLDKHGKATESPNINSKLHGTPGSQSAPANSVPSKQKSSLCVNEKLFMQLLFKVLVSVSEKSSIILYIRDVDKIFLQSEQLYNLFHEMLGRLPGPVLILGSKIANIPKKPDLPPWMLPPPKVNKRSKVDERLAALFPYIIKVKPPEDETDLEDWKAQLEENKKTIKSQDNRNHIAEVLAASDVECRDLNSISHDDTKILSKYIEEIVVSAISHYLMNTKDPEYRNGKLVISSESLCHALDLFRKKKSNNDGKKQVKNGKKDVRPDSKHERHIRDELIPANEIGVTFSDIGALEEVKESLQELVMLPLRRPELFKSGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSMWFGEAEKHVRALFSLAAKVSPTIIFIDEVDSLLGRRSRCGEHEATRRIKNEFMTHWDGLLTKQHERILVLAATNRPFDLDDAIIRRFERRVMVGLPSVEAREIILKTLLAKENTENLDLKKVAVMTEGYTGSDLKNLCTAAAYRPVRELIKQEKLKDMEKNKKEAEGQSSEAASSAKEDTEEQGKNKKDAEGQSSQAASSPKEGPKEQDKNKKDAEGQSSESDKEDKEEPVITLRPINMEDMIQAKNQVPASFDGHGAIMHELRQWNELYGDRGSL	818

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4126g00005	818	Pfam	AAA+ lid domain	658	701	IPR041569	-
	Pral4126g00005	818	MobiDBLite	consensus disorder prediction	717	731	-	-
	Pral4126g00005	818	MobiDBLite	consensus disorder prediction	696	778	-	-
	Pral4126g00005	818	Pfam	ATPase family associated with various cellular activities (AAA)	506	636	IPR003959	GO:0005524\|GO:0016887
	Pral4126g00005	818	SMART	AAA_5	502	639	IPR003593	GO:0016887
	Pral4126g00005	818	ProSitePatterns	AAA-protein family signature.	609	628	IPR003960	GO:0005524\|GO:0016887
	Pral4126g00005	818	Gene3D	-	638	712	-	-
	Pral4126g00005	818	MobiDBLite	consensus disorder prediction	190	216	-	-
	Pral4126g00005	818	MobiDBLite	consensus disorder prediction	745	776	-	-
	Pral4126g00005	818	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	41	817	-	-
	Pral4126g00005	818	MobiDBLite	consensus disorder prediction	179	216	-	-
	Pral4126g00005	818	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	461	685	IPR027417	-
	Pral4126g00005	818	MobiDBLite	consensus disorder prediction	429	452	-	-
	Pral4126g00005	818	Coils	Coil	333	353	-	-
	Pral4126g00005	818	Gene3D	-	465	637	IPR027417	-
	Pral4126g00005	818	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	465	640	-	-
	Pral4126g00005	818	Coils	Coil	690	717	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4126g00005	Pral-Chr4126	68491	75029	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4126g00005	433	697	Calmodulin-binding Proteins	AT3G56690	37.269	2.13e-42	165

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4126g00005	-		-	pcin:129285842	1265.75