LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4126g00002	ATGGAACACAAGCACGTTTTGCTGTCGGCATTGGGTGTTGGAGTTGGTCTCGGAGCAGGCCTTGGGTTGAGCTCAGGCCTTGTTGGAGGGAATCGCGAGTCAGCTGATAAGCTTTATGGCGAACAGATCGAGCAGGAACTTTTGAGGCTGGTGATTGATGGAAAAGAATGCAAGGAAACTTTCCAAGACTTTCCTTATTACTTAAGTGAAAGAACCCGAGAGCTATTGAAAAGTGCTGCGTCTGTTCATTTAAAACAACCTTCCTTCTCCAAACATACCAGGAACCTTTCACCAGCAAGCAGGGCAATTCTGCTTCATGGGCCTGCAGAGTTTTACCTGCAAACGCTTGCCAGGGCTTTAGCACATCACTTTGAATCAAAGTTGCTGCTGCTAGATTTGGCTGACTTTTCTTCCAAGATCCAGAAAAAATATGGATTTGCAAGACAAGAACCATCTTCTAAAATATCCTTATCTGAGGTGGCTTCCGAGAGATTGTCTGGTTTGCTTTGTTCCTTTTCGGCAGTCTTCCCTTCAAATGGCAAAAAAAAAGGTACTTTTCAAAATCACAGTAATGCTACTGGAAGTCCCATTATTGCTTCAAAGCTTCACGAGACTACTGCTTCCCAATCTGCGCCAGCAAATTCTGCTCCCTTGAAGCAGAAGAGCAGCTTGTGTGTCGATGAAAAACTCTTTATACAGTTGCTTTATAAGGTCTTGATTTCTGTGTCGGAAGAGAACCCCATCATTTTGTACATCAGGGAAGCTGACAAGATTTTTCTCCAATCAGAGCAACTTTATAATTTGTTTCATGAAATGCTAGGGGAACTTCCAGGGCCAGTGCTCATACTTGGTTCCAAGATCTCAGGCAAAGCCAAAAAACCTGATTTCCCACCATGGATGCTTGCGCCTCACAAAGGGTATAAATGTTCAAAAGTTGATGAACAGCTCGCAGCATTATTCCCTTACAGTATTAAGATCAAACCACCAGAAGATGAAGCTGATCTTGAAGATTGGAAAGCCCAACTGGAAGAGAACAAGAAAACAATTAAATCTCAAGATAACAGAAACCATATTGCCGAAGTTCTGGCAGCAAATGATGTTGAATGTAAAGACTTGAATTCAATCAGCCATGAGGACACAAAGATACTAAGTAGATATATTGAAGAAATTGCTGTATCTGCAATATCTCACTACTTCATGAATACCAAGGATCCAGAATACCAGAACGGGAAGCTTGTAATATCATCTGAGAGTTTGTGCCAAGCTTTGGATCTATTTCGCAAAAAGAAAAGTAATGATGATGGAAAGAAGCAAGGGACTAGTGGAAAGAAGCAAGGGCCTGATGGAAAGAAGGAAGTTTGTCCAGACAATGAGCATGAGAGGCACATAAGAGAGGAACTTATCCCTGCGAATGAGATAGGTGTGACATTCTCAGATATTGGTGCATTAGAGGAAATTAAGGAATCACTACAAGAGCTAGTCATGCTTCCACTTCGAAGACCAGAGCTCTTCAAAAGTGGGCTTCTTAAGCCTTGTCGAGGCATATTGCTTTTTGGACCTCCAGGTACTGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCAGGAGCTAGTTTCATCAATGTCTCCATGTCTACCATCACATCAATGTGGTATGGAGAAGCTGAGAAGCATGTCCGTGCTCTGTTCTCTCTAGCTGCAAAGGTTTCTCCAACTATCATTTTCATTGATGAAGTTGATAGCTTGCTCGGGCGACGATCAAGATGTGGAGAGCATGAGGCTACGAGGAGCATTAAGAATGAATTCATGACCCATTGGGATGGTCTATTGACAAAACAACACGAGCGTATTCTAGTTCTTGGTGCAACCAATAGGCCATTTGACCTCGATGATGCAATCATAAGACGGTTTGAGCGAAGAGTCATGGTTGGTCTGCCATCTGTCGAGGCTAGGGAGATTATCTTGAAAACTCTGCTAGCTAAGGAAAATACTGAAAACTTAGACCTCAAAAAGATTGCAGTCATGACAGAGGGATATACTGGAAGCGACCTCAAGAATTTGTGCACTGCTGCTGCTTATCGACCTGTTAGGGAGCTCATAAAGCAGGAGAAATTGAAGGATATGGAAAAGAAGAAGAAAGAGGCTGAAGGCCAAAGCTTGGAAGCTCATTCAAGTCCCAAAGAGGATACAGAAGAACAAGGTGAAAATGAGAAAGATGCTGAAGGCCAAAGCTCACAAGCTGCTTCAAGTCCCAAAGAGGGTCCAAAAGAGCAAGACGAGAATAAGAAAGATGCTGAAGACCAAAACTCAGAAGGTGATAAGGAGGACAAAGAAGAGCCGGTAATTACCTTGAGGCCCATAAATATGGAAGACATGATTCAGGCTAAGAATCAGGTTCCTGCAAGTTTTGATGCTCACGGGGCAATTATGCATGAATTGAGGCAGTGGAATGAGCTGTACGGAGAACGAGTTTCGCTGTAG	2484	0.4291	MEHKHVLLSALGVGVGLGAGLGLSSGLVGGNRESADKLYGEQIEQELLRLVIDGKECKETFQDFPYYLSERTRELLKSAASVHLKQPSFSKHTRNLSPASRAILLHGPAEFYLQTLARALAHHFESKLLLLDLADFSSKIQKKYGFARQEPSSKISLSEVASERLSGLLCSFSAVFPSNGKKKGTFQNHSNATGSPIIASKLHETTASQSAPANSAPLKQKSSLCVDEKLFIQLLYKVLISVSEENPIILYIREADKIFLQSEQLYNLFHEMLGELPGPVLILGSKISGKAKKPDFPPWMLAPHKGYKCSKVDEQLAALFPYSIKIKPPEDEADLEDWKAQLEENKKTIKSQDNRNHIAEVLAANDVECKDLNSISHEDTKILSRYIEEIAVSAISHYFMNTKDPEYQNGKLVISSESLCQALDLFRKKKSNDDGKKQGTSGKKQGPDGKKEVCPDNEHERHIREELIPANEIGVTFSDIGALEEIKESLQELVMLPLRRPELFKSGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSMWYGEAEKHVRALFSLAAKVSPTIIFIDEVDSLLGRRSRCGEHEATRSIKNEFMTHWDGLLTKQHERILVLGATNRPFDLDDAIIRRFERRVMVGLPSVEAREIILKTLLAKENTENLDLKKIAVMTEGYTGSDLKNLCTAAAYRPVRELIKQEKLKDMEKKKKEAEGQSLEAHSSPKEDTEEQGENEKDAEGQSSQAASSPKEGPKEQDENKKDAEDQNSEGDKEDKEEPVITLRPINMEDMIQAKNQVPASFDAHGAIMHELRQWNELYGERVSL	827

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4126g00002	827	Pfam	AAA+ lid domain	667	710	IPR041569	-
	Pral4126g00002	827	Pfam	ATPase family associated with various cellular activities (AAA)	515	645	IPR003959	GO:0005524\|GO:0016887
	Pral4126g00002	827	Coils	Coil	335	355	-	-
	Pral4126g00002	827	MobiDBLite	consensus disorder prediction	708	782	-	-
	Pral4126g00002	827	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	42	823	-	-
	Pral4126g00002	827	SMART	AAA_5	511	648	IPR003593	GO:0016887
	Pral4126g00002	827	MobiDBLite	consensus disorder prediction	708	740	-	-
	Pral4126g00002	827	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	474	649	-	-
	Pral4126g00002	827	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	471	694	IPR027417	-
	Pral4126g00002	827	ProSitePatterns	AAA-protein family signature.	618	637	IPR003960	GO:0005524\|GO:0016887
	Pral4126g00002	827	Gene3D	-	33	350	IPR027417	-
	Pral4126g00002	827	MobiDBLite	consensus disorder prediction	754	782	-	-
	Pral4126g00002	827	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	68	363	IPR027417	-
	Pral4126g00002	827	MobiDBLite	consensus disorder prediction	430	457	-	-
	Pral4126g00002	827	Gene3D	-	647	717	-	-
	Pral4126g00002	827	Coils	Coil	699	719	-	-
	Pral4126g00002	827	Gene3D	-	474	646	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4126g00002	Pral-Chr4126	18002	42118	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4126g00002	475	706	Calmodulin-binding Proteins	AT3G56690	38.235	7.34e-40	157

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4126g00002	-		-	pcin:129285842	1230.7