Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4119g00091 ATGAATTTTCCTGGTTGGAATTTTGAGAATGATGCTTTTGTCACCAATCAAAAGAAGCCCATGGGGACGGACCAAGAACTTGTGGAGCTGATATGGCAAAACGGACAGGTAGTTATGAACAGCCAGACGCAAAGAAAACCAGCTGCAAATTCTATCGACTCGAGACAGTTCCAGAAAAATGATCAATCAACAATCAGGGCTAATGAGTCGTATGGGAACTCAAGTCATTTGATTCAAGATGATGACGCCGTCTCATGGATTCAATATCCACTTGAGGATCCATTGGACCAACAACTTTGTTCAAACATTTTATCTGAACTGCCATCCTCTGGACTTGAGTCGGGCAAGCCAATAAGACAACTTGAAGAGGGAAAGTATGTCAAATTCGGCCCCTACAGTGCTTGCCATGTGACTGCAAGTTCACAAACACCAAATATAAAGCCCTTTTCTCAGGAATTATCAGGAGATGCTATGCCTGCTCCAAGAGTTCATTTTCCTGATTCACCGCAGAAAAATATTCATTTTGGTGGATCACAAAATGTCCTCAATTTTTCTCAGTTTTCAGAATCCTCCAAAGTAGCCCCAACATCTTCTAATGCACAGTCTGAAGGTAAAGGTAATGGTGGTCTGTTGCAAAACAAGGGCAAAGAGTGCTCTGTCATGACAGTTGGTTCAAGTCACTGTGGCAGCAACCAAGTCCCTCTAGATCCTGACATAAGCAGGGCATCAAGCAATGGGGTTTGGACTACCGCTTTATTTTCCGAGCCTGAACCCCAGAGAGATGGCATCCAGAAATCAATCCATCAGAGTGAAAAGGGGAAGTCAGAGGTGCCTGAACCAACTTTGAGTTCATCATCAGATGACTCTGGTAGTCTTGCAAAAACTTGCTCCTGGTCTGCAAGAAGCCATGGCCAAAAAAGGAAAAAGGTTGATACAGAAGAATTAGAGGAACAAAGTGAGGACACAGAACCCAAATCGGCTGTTGAAAACAAGGTAGCTCAGGGGACAAGGCCTTCCCGAAGGAACCGTGCAGCTGAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGATAGGATCAATGAGAAGATGAGGACATTGCAACAACTCATACCTCATAGTAACAAGACAGATAAAGCATCAATGTTGGATGAGGCAATTGAGTACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGAGCTGGAATAGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCCCAAATGGGTATGGGAATGGCTTCACCCTCTTTTCCTCCTATTCCAAATCCGGTGCAATTACCAAGAACATCACTTGATCATTCCATATCCATGGCTCAACCACCAAACCAGGGTTTGATGCGTCAAGCTCCTGTTATGGGTCCCTTTACTTATCAGAATCAGATGCAAAATCAAGCTCTCTCAGAGCAATTCGCGCGTTATATGGGGTATCAATTTATGCAAAGTGCCTCTCAGCCGATGAATGGATTTAACTATGGATCTCAAGTACAACATAGTCAACCAATGATTCCACCCGGCAGTAGCAGTGGACCCTTGAACGGAGCTGCAAATAATGATGATAATTTAGGTGGCAAGATGGGTTAA 1617 0.436 MNFPGWNFENDAFVTNQKKPMGTDQELVELIWQNGQVVMNSQTQRKPAANSIDSRQFQKNDQSTIRANESYGNSSHLIQDDDAVSWIQYPLEDPLDQQLCSNILSELPSSGLESGKPIRQLEEGKYVKFGPYSACHVTASSQTPNIKPFSQELSGDAMPAPRVHFPDSPQKNIHFGGSQNVLNFSQFSESSKVAPTSSNAQSEGKGNGGLLQNKGKECSVMTVGSSHCGSNQVPLDPDISRASSNGVWTTALFSEPEPQRDGIQKSIHQSEKGKSEVPEPTLSSSSDDSGSLAKTCSWSARSHGQKRKKVDTEELEEQSEDTEPKSAVENKVAQGTRPSRRNRAAEVHNLSERRRRDRINEKMRTLQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGIAPMMFPGIQHYMSQMGMGMASPSFPPIPNPVQLPRTSLDHSISMAQPPNQGLMRQAPVMGPFTYQNQMQNQALSEQFARYMGYQFMQSASQPMNGFNYGSQVQHSQPMIPPGSSSGPLNGAANNDDNLGGKMG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4119g00091 538 MobiDBLite consensus disorder prediction 188 208 - -
Pral4119g00091 538 MobiDBLite consensus disorder prediction 505 527 - -
Pral4119g00091 538 SMART finulus 349 398 IPR011598 GO:0046983
Pral4119g00091 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Pral4119g00091 538 PANTHER TRANSCRIPTION FACTOR PIF3 15 510 IPR044273 GO:0003700|GO:0006355
Pral4119g00091 538 MobiDBLite consensus disorder prediction 42 61 - -
Pral4119g00091 538 MobiDBLite consensus disorder prediction 261 275 - -
Pral4119g00091 538 Gene3D - 339 399 IPR036638 GO:0046983
Pral4119g00091 538 MobiDBLite consensus disorder prediction 505 538 - -
Pral4119g00091 538 MobiDBLite consensus disorder prediction 304 327 - -
Pral4119g00091 538 MobiDBLite consensus disorder prediction 188 241 - -
Pral4119g00091 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 405 IPR036638 GO:0046983
Pral4119g00091 538 MobiDBLite consensus disorder prediction 276 300 - -
Pral4119g00091 538 MobiDBLite consensus disorder prediction 218 241 - -
Pral4119g00091 538 CDD bHLH_AtPIF_like 343 406 IPR047265 -
Pral4119g00091 538 FunFam Basic helix-loop-helix transcription factor 338 401 - -
Pral4119g00091 538 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Pral4119g00091 538 MobiDBLite consensus disorder prediction 253 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4119g00091 Pral-Chr4119 722194 726519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4119g00091 3 96 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 35.922 1.20e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4119g00091 HLH 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4119g00091 K16189 - gmx:100784531 637.491