Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4119g00070 ATGGATAATGCAAACGAAGCATCATCATCCTTGAGTTTTGCATCTTCTTACTTATCAAATGGGTCAAGTAATCCGAACATATCTTCCTGCACTAGCCATGAGCAAGTGGCAAATCCTGAAAATTTAAGCCTCATTAAGCTGAGCGGAAGCCTTGAGAAGCTATTGATAGATACTGAATATGATTATAGTGACGTTGATATTGTTGTTGAGGGCAAACATGTGGGAGTTCATAGGTGTATATTGGCTTCACGTAGTCAGTTTTTTCATGAACTTTTTAAGAAAGGAAATGATGGCTCGGTGAAGGAAGGTAAGCCAAAGTATCTCATGTCAGACCTGGTGCCTTACGGCGTCGTTGGATACGAAGCATTCCTTGTTTTCTTGCATTATTTGTATACTGGAAAGCTGAAGGCGTCACCCCCAGAAGTATCAACCTGTGTTGATGAAAGCTGTGCACATGATGCATGCTGGCCTGCTATTAATTATGCTTTAGAGCTAATGTATGCTTCTTCCAGGTTTCAGATGAAAGAGCTTGTTTTGCTTGTTCAGCGGCGTCTCCTCAATTTTGTTGAGAAGGCTCTTGTAGAAGACGTGATTCCTATTCTTATGGCTGCCTTCTACTGCCAACTGGACCAGCTTCAGTCACATTGCATCCAGAGATTAGCAAGATCTGACCTTGAGAACAGAACTTTGGAAAGAGAGCTCCCACCTGAAGTTTTCAGTGAAATAAAATCACTCCGTCGCAAAGTGCTGGCAGAATCCACTCCTGATGCAATGGAAATGGAACCTTCAAATGAAAGAAGTGTTACAAAAATCCTTAAAGCATTGGACTCTGATGATATTGAGCTGATGACTCTTCTTTTGGCCGAGTCCAGTGTCACTCTAAATGATGCTTATGCCCTGCACTATGCCTGTGCCTATTGTGATCCTAAGATTGTGAAAGAAGTTCTTAATCTTGGGTCGGCTGACATAAACCATACAAATCCCCGAGGATATACAGTTCTTCATGTGGCTGCAAGGCGCAAAGATCCAACAATTTTAGTAGCACTGTTGACTGAAGGGGCCTGTGTATCAAGTGTGACACCAGATGGACAGACAACTGTTGGAATTTGTCGGAGGATGACGAGACCCAAGGACTATAATGAGATAGCAGAGCGGGGGAAGGAATCTAACAAAGACAAGCTCTGTGTTGATCTCCTGGAGAGAGAAATGAGAAGAAATTCAATGTCTGTGAATGCATCTGATACATCGGAGTTAACTGCTTATGATTTGCATGTGAGACTTGATTACCTGGAAAATAGAGTTGCTTTCGCTAGGCTATTGTTTCCTGCCGAGGCTAAGGTGGCCATGGCTAATGCTCAGCAAGAGTCAACACTTGATCTAAATGAAACTCCTTCTATGAGAACCAGAAAACTCCAGTTAAGATTGCAAGCCCTCCTGAAAACAGTTGAGAACGGCCGGCGTTTCTTTCCCCATTGCTCTGAGGTTCTTGATAAGTTTCTAGATGACGATATGCCAGATATTTTCTTCTTAGAGAAGGGTAGCGAACAAGAACAGAGAATCAAGAAGCAACGCTTCATGGAGCTCAAAGAGGATGTGCAGAAGGCATTTCATAAGGATATGGCTGAAACCAATGGTTCAGGTTTTTCCTCAGTTTCTTCCTCATCATCCTCATGTAAGAAGGGAGGTCTCAGCCAAAGAGTGAGGAAAAAGTGA 1713 0.4279 MDNANEASSSLSFASSYLSNGSSNPNISSCTSHEQVANPENLSLIKLSGSLEKLLIDTEYDYSDVDIVVEGKHVGVHRCILASRSQFFHELFKKGNDGSVKEGKPKYLMSDLVPYGVVGYEAFLVFLHYLYTGKLKASPPEVSTCVDESCAHDACWPAINYALELMYASSRFQMKELVLLVQRRLLNFVEKALVEDVIPILMAAFYCQLDQLQSHCIQRLARSDLENRTLERELPPEVFSEIKSLRRKVLAESTPDAMEMEPSNERSVTKILKALDSDDIELMTLLLAESSVTLNDAYALHYACAYCDPKIVKEVLNLGSADINHTNPRGYTVLHVAARRKDPTILVALLTEGACVSSVTPDGQTTVGICRRMTRPKDYNEIAERGKESNKDKLCVDLLEREMRRNSMSVNASDTSELTAYDLHVRLDYLENRVAFARLLFPAEAKVAMANAQQESTLDLNETPSMRTRKLQLRLQALLKTVENGRRFFPHCSEVLDKFLDDDMPDIFFLEKGSEQEQRIKKQRFMELKEDVQKAFHKDMAETNGSGFSSVSSSSSSCKKGGLSQRVRKK 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4119g00070 570 Gene3D - 247 477 IPR036770 -
Pral4119g00070 570 SUPERFAMILY Ankyrin repeat 264 373 IPR036770 -
Pral4119g00070 570 FunFam Regulatory protein NPR3 37 221 - -
Pral4119g00070 570 Pfam NPR1/NIM1 like defence protein C terminal 454 555 IPR021094 -
Pral4119g00070 570 Pfam NPR1/NIM1 like defence protein C terminal 371 458 IPR021094 -
Pral4119g00070 570 Pfam Ankyrin repeats (3 copies) 278 354 IPR002110 GO:0005515
Pral4119g00070 570 Pfam BTB/POZ domain 60 181 IPR000210 GO:0005515
Pral4119g00070 570 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
Pral4119g00070 570 SMART BTB_4 63 189 IPR000210 GO:0005515
Pral4119g00070 570 PANTHER REGULATORY PROTEIN NPR3 19 561 IPR044292 GO:0009862|GO:2000022|GO:2000031
Pral4119g00070 570 MobiDBLite consensus disorder prediction 543 562 - -
Pral4119g00070 570 Pfam Domain of unknown function (DUF3420) 224 268 IPR024228 -
Pral4119g00070 570 SMART ANK_2a 329 358 IPR002110 GO:0005515
Pral4119g00070 570 SMART ANK_2a 295 325 IPR002110 GO:0005515
Pral4119g00070 570 Gene3D Potassium Channel Kv1.1; Chain A 27 222 IPR011333 -
Pral4119g00070 570 CDD BTB_POZ_NPR_plant 46 176 - -
Pral4119g00070 570 MobiDBLite consensus disorder prediction 543 570 - -
Pral4119g00070 570 ProSiteProfiles Ankyrin repeat profile. 329 361 IPR002110 GO:0005515
Pral4119g00070 570 SUPERFAMILY POZ domain 60 187 IPR011333 -
Pral4119g00070 570 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4119g00070 Pral-Chr4119 540363 545137 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pral4119g00070 BTB 8.5e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4119g00070 K14508 - gmx:100816582 790.415