Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4114g00021 ATGGCGGAGAAGCACAAATGCAAGCTCTGTTCCAGAACTTTCGCTCATGGCAGATCACTCGGCGGCCACATGAAGGCCCATTTCGCCACCCTCCCTCTTCCGCCCAGGCCTCAACCACCGCCTTCACCTTCATTCTCGTCTTCCTCCTCACAAGATTCCGACGACAAGGCTCTGATTTATGGCCTCAGAGAAAATCCCAAGAAAAGCTTCAGGCTTGCAGATCCTGGGTTCTCCCTTGTTGATACTACTGCCTCTGTTATTGTTCAGGACCGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCTTCGATCCAAGCGAACCAGAACCCAGAGATTACCATCACCCAAGAAGCCTAAACCAAGTCTCTCCGAGTCGCCCGCTGAACCCGAACCGGCGAGCTCTGTTTCTGAAACTAGCACCGAAGAAGATGTCGCTATGTGTCTCATTATGCTGTCGAGAGACAAATGGAAGAGAAACGCCGTAAAGAAAGAAGAAGAAGATCGAGAAGGAGACGAGAAATCGAAGCGATTCGAGGAGATCAAGGTGAAGAAAGGAGTTCGCGGGAAGCATCAGTGTGAGAAATGCAGAAAGACGTTTCGATCGTTCCGAGCATTGGAGAGTCACAGGAACGTTTGTTTTCGTGATGAACAAGACGCTATCAACAACAACAACGATTCGATCTTCCAATGCCCATTTTGTTATAAGGTGTTTGGGTCTGGACAAGCACTTGGTGGCCACAAGAGATCTCATCTCCTTCAATCTCCATCATCAACCTTGAACGATTCTGCAAGATTAATCAAAGAAAGCTTCATAGATCTCAACTTACCAGCCCCAGCTCCAGCAGCAGCAGAAGATGAACTCAGCGTGGTTTCTGATGCATAA 885 0.4893 MAEKHKCKLCSRTFAHGRSLGGHMKAHFATLPLPPRPQPPPSPSFSSSSSQDSDDKALIYGLRENPKKSFRLADPGFSLVDTTASVIVQDRESETESKNPTRLRSKRTRTQRLPSPKKPKPSLSESPAEPEPASSVSETSTEEDVAMCLIMLSRDKWKRNAVKKEEEDREGDEKSKRFEEIKVKKGVRGKHQCEKCRKTFRSFRALESHRNVCFRDEQDAINNNNDSIFQCPFCYKVFGSGQALGGHKRSHLLQSPSSTLNDSARLIKESFIDLNLPAPAPAAAEDELSVVSDA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4114g00021 294 Gene3D Classic Zinc Finger 155 259 - -
Pral4114g00021 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Pral4114g00021 294 SUPERFAMILY beta-beta-alpha zinc fingers 191 251 IPR036236 -
Pral4114g00021 294 MobiDBLite consensus disorder prediction 28 73 - -
Pral4114g00021 294 SMART c2h2final6 229 251 IPR013087 -
Pral4114g00021 294 SMART c2h2final6 191 211 IPR013087 -
Pral4114g00021 294 SMART c2h2final6 5 27 IPR013087 -
Pral4114g00021 294 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Pral4114g00021 294 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Pral4114g00021 294 Pfam C2H2-type zinc finger 191 210 - -
Pral4114g00021 294 Pfam C2H2-type zinc finger 5 27 - -
Pral4114g00021 294 Pfam C2H2-type zinc finger 229 251 - -
Pral4114g00021 294 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 294 IPR044303 GO:0006355
Pral4114g00021 294 MobiDBLite consensus disorder prediction 128 142 - -
Pral4114g00021 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Pral4114g00021 294 SUPERFAMILY beta-beta-alpha zinc fingers 4 30 IPR036236 -
Pral4114g00021 294 MobiDBLite consensus disorder prediction 90 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4114g00021 Pral-Chr4114 91414 92715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4114g00021 3 291 C2H2 Transcription Factor Family AT3G60580 37.421 3.79e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4114g00021 zf-C2H2_6 1.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4114g00021 - - qsa:O6P43_034089 283.108