Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4107g00005 ATGGTTATGGTGAGGTTACTATTCCTCCTGTTTTTCTGCCTGTGTATTGCCACAGAAGTGGTGGCTAGAGCTGGAAATACCATTACAAACCAGACTAAAGTTCCTCCGAGGCCAAGCGTTGTGAGAATCGGAGCACTGTTTACTTTCGATTCGGTCATTGGGAAATCAGCTAAACCTGCAATTTTAGCTGCCATCGATGAGGTTAATAACGATACGAGCATTCTTCCTGCTACGAAAATGGAAGTTATTTTACATGATACAAACTGCAGCGGGTTTCTCGGCACAGTGGAAGCCCTGCAGTTGATGGAGAATGATGTGGTTGCTGCTATTGGTCCACAGTCATCTGGGATAGCTCATGTCATCTCTCATGTTGTTAATGAACTCCATGTGCCTCTTTTGTCATTTGGGGCTACAGACCCTACTCTTGCTTCTCTGCAGTACCCATATTTCGTCCGCACTACCCAGAATGACTACTTTCAGATGAACGCAATCGCAGACTTGGTTGACTACTTTGGTTGGAAGGAGGTGATTGCTATCTTTGTAGATGATGATAATGGAAGAAGTGGAATATCAGCTCTGGGTGACGCACTTGCGAAGAAGCGTGCCAAGATCTCTTATAAGGCTGCTTTCACTGCTGGAGCCCCTCCAAGTAATATCAGTGACTTGTTGAATGGGGTAAACTTAATGGAATCACGGGTCTATGTTCTCCATGTGAACCCTGATAGTGGTTTGTCCATTTTTTCTATTGCGGAGAAAATTGGTATGATGGGCAATGGTTATGTCTGGATTGCAACAGATTGGCTTCCTTCAGTTCTAGATGCATCAGAACCAGCTGATCCTGACACAATGAATCTCTTGCAAGGGGTTATCGCCTTGCGCCATCATACTCCTGACACTGATCTCAAGAAGAGGTTTATCTCTAGGCTGAAAAACAGTAAAGACAAGGACACTAAAAGCTTTAATTCCTTTGCATTATATGCGTATGATTCAGTTTGGTTAGCAGCACGTGCTCTTGATGCATTTCTTAATGAGGGTGGAAATGTATCTTTCAGTAGTGACCCCAGATTGCATGACACAAATGGAAGCATGTTGCATTTAGCATCACTTCGTACATTTGATAGTGGCCCACAGTTTCTCCAGAAAGTCTTGGCAACGAACTTCACCGGTGTAACTGGTCAAATTCAGTTTGATGGGGACAAGAATTTAATCCATCCAGCATATGATATTCTAAACATTGGTGGAACTAGCCGTAGAATTGGTTATTGGTCTAATTACTCTGGCCTGTCAGTTGTAACACCTGAAACTTTATATACAAAACCGCCTAACATGTCATCTAGCAATCAACATCTTTACGGTGTGATATGGCCAGGAGAGACTACAGCAACACCCCGGGGATGGGTGTTTCCCAACAATGGAAAGCCACTGCGAATAGCAGTACCAAACCGAATAAGCTATCTGGAGTTTGTTTCCAAAGACAAAGACACCCCGGGAGTAAAAGGTTATTGCATTGATGTCTTTGAAGCAGCCTTAAACCTGCTACCATATCCCGTCCCACGACAATATATATTATATGGAGATGGTCGCAGAAATCCGAGCTACAATGCACTTACAAATGCAGTTGCTCAAAATAATTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAACAGAACAAGAATTGTGGATTTTACTCAACCTTTCATGGAATCAGGGTTGGTTGTAGTTGTTGCTGTTAAGGAGGAGAAGTCAAGCCCTTGGTCATTTCTCAAGCCATTCACTGCACAAATGTGGTGTGTCACCGGTGCCTTCTTTCTCTTTGTGGGAGCTGTGGTATGGATCCTTGAGCACCGTCTCAATCATGAGTTTCGTGGTTCTCCAAGGAAACAACTCATGACCGTTTTTTGGTTTAGCTTCTCAACAATGTTTTTCTCACATAAAGAAAACACTGTGAGCACTTTGGGGAGGTTGGTTTTGTTGATATGGCTTTTTGTGGTGTTAATCATCAATTCAAGCTACACTGCTAGCTTGACATCGATCCTCACAGTAAAGCAACTATCATCACAGATTGAAGGAATTGATAGCTTGATTTCAAGTACTCAGCCTATTGGAATTCAAGAGGGGTCATTTGCACGGAAGTATCTGATAAATGAGCTGAATGTAGCTGAATCTAGGATAGTGATTTTGAAAAACCAGCAGGATTATATTGACGCCCTTCAGCGTGGACCACGGGCTGGAGGTGTGGCGGCAATTGTTGATGAGCTTCCTTATATTGAGATATTAATGTCTAATACTAAGTGTAAATTCAGAACTGTAGGTCAGGAGTTCACTAAGAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCCCTTGCTGTGGACTTGTCAACCGCCATTCTTCAACTCTCGGAGAACGGGGACTTGCAAAAGATCCACGACAAATGGCTCTCAAAATTTACCTGTGCTGCAAAAGTGAATGACGTTGATTCAAACCAGCTCTCTCTCAACAGCTTCTGGGGCCTCTTTCTCATGTGTGGGATTGCATGTTTCCTTGCTCTAGTTGTATTCTCTATCAGGGTGTTCTGTCAATATATGAAATTCATCCCAGACAGCGAGGAGGCTGAAGAGCATATTGAGCCTGCCAGTGCCAGATCCACCAGCTTCAAGAGCTTAATTGATTTTGTAGATAAAAAGGAAGCCGAAATAAAGGAGATTTTGAGGAACAAGGGTAAGAAACGACGGCGCAGCCAGAGCTTAGACAGGAACTCCAATTATTCAAACAGCTAA 2787 0.432 MVMVRLLFLLFFCLCIATEVVARAGNTITNQTKVPPRPSVVRIGALFTFDSVIGKSAKPAILAAIDEVNNDTSILPATKMEVILHDTNCSGFLGTVEALQLMENDVVAAIGPQSSGIAHVISHVVNELHVPLLSFGATDPTLASLQYPYFVRTTQNDYFQMNAIADLVDYFGWKEVIAIFVDDDNGRSGISALGDALAKKRAKISYKAAFTAGAPPSNISDLLNGVNLMESRVYVLHVNPDSGLSIFSIAEKIGMMGNGYVWIATDWLPSVLDASEPADPDTMNLLQGVIALRHHTPDTDLKKRFISRLKNSKDKDTKSFNSFALYAYDSVWLAARALDAFLNEGGNVSFSSDPRLHDTNGSMLHLASLRTFDSGPQFLQKVLATNFTGVTGQIQFDGDKNLIHPAYDILNIGGTSRRIGYWSNYSGLSVVTPETLYTKPPNMSSSNQHLYGVIWPGETTATPRGWVFPNNGKPLRIAVPNRISYLEFVSKDKDTPGVKGYCIDVFEAALNLLPYPVPRQYILYGDGRRNPSYNALTNAVAQNNFDAAVGDVTIVTNRTRIVDFTQPFMESGLVVVVAVKEEKSSPWSFLKPFTAQMWCVTGAFFLFVGAVVWILEHRLNHEFRGSPRKQLMTVFWFSFSTMFFSHKENTVSTLGRLVLLIWLFVVLIINSSYTASLTSILTVKQLSSQIEGIDSLISSTQPIGIQEGSFARKYLINELNVAESRIVILKNQQDYIDALQRGPRAGGVAAIVDELPYIEILMSNTKCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSKFTCAAKVNDVDSNQLSLNSFWGLFLMCGIACFLALVVFSIRVFCQYMKFIPDSEEAEEHIEPASARSTSFKSLIDFVDKKEAEIKEILRNKGKKRRRSQSLDRNSNYSNS 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4107g00005 928 SMART GluR_14 476 818 IPR001320 GO:0015276|GO:0016020
Pral4107g00005 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 54 70 - -
Pral4107g00005 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 114 142 - -
Pral4107g00005 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 327 339 - -
Pral4107g00005 928 Gene3D - 586 710 - -
Pral4107g00005 928 Gene3D - 470 585 - -
Pral4107g00005 928 FunFam Glutamate receptor 586 716 - -
Pral4107g00005 928 PIRSF IGluLR_plant 1 928 IPR017103 -
Pral4107g00005 928 CDD PBP1_GABAb_receptor_plant 42 431 IPR044440 -
Pral4107g00005 928 MobiDBLite consensus disorder prediction 906 928 - -
Pral4107g00005 928 FunFam Glutamate receptor 712 820 - -
Pral4107g00005 928 Coils Coil 895 915 - -
Pral4107g00005 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 880 IPR015683 -
Pral4107g00005 928 FunFam Glutamate receptor 156 317 - -
Pral4107g00005 928 CDD GluR_Plant 473 816 - -
Pral4107g00005 928 Pfam Receptor family ligand binding region 58 413 IPR001828 -
Pral4107g00005 928 Gene3D - 60 404 - -
Pral4107g00005 928 SUPERFAMILY Periplasmic binding protein-like II 450 816 - -
Pral4107g00005 928 SUPERFAMILY Periplasmic binding protein-like I 37 467 IPR028082 -
Pral4107g00005 928 FunFam Glutamate receptor 470 586 - -
Pral4107g00005 928 Gene3D - 711 819 - -
Pral4107g00005 928 Pfam Ligand-gated ion channel 818 849 IPR001320 GO:0015276|GO:0016020
Pral4107g00005 928 Gene3D - 156 428 - -
Pral4107g00005 928 Pfam Bacterial extracellular solute-binding proteins, family 3 497 817 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4107g00005 Pral-Chr4107 11350 15967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4107g00005 37 783 Ion Channels AT1G05200 70.053 0.0 1141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4107g00005 K05387 - qsa:O6P43_000581 1444.1