Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4104g00179 ATGTCAAAAGGAACTAGTCTGGTTCTGGATTCATCTGAAAATGGCACAGATTTATCTCAGGATGATATTGGCACCATTGAGGAAACCCCAGAAGAGTCGATTTTGTCTCGGCAAACTTCTGTGAACCTTGTTCCTTTTCTTGGTCAAAGATTTGTTTCTCAAGAAGCTGCTTATGAATTTTATTGCAGCTTTGCAAAACAATGTGGTTTTTCAATTAGACGACATCGCACTCGAGGAAAGGATGGGGTTGGTCGGGGGGTTACTAGAAGAGATTTTACTTGCCATCGTGGTGGTTATCCTCAGATTAAGCCATCTGATGATGGAAAGATGCAAAGGAATCGCAAATCTTCTCGTTGTGGCTGTCGAGCATACATGCGTATTGTCAAAAGGGCAGATTTTGATGTCCCTGAATGGCGAGTGACAGGCTTTAGCAACACCCATAATCATGAGTTATTGAAATCCAATGAGGTGCGTCTTCTTCCAGCATACTGCACAATATCTCCAGATGACAAGAGCCGTATATGCATGTTTGCTAAAGCTGGAATGTCAGTGAGGCAAATGTTAAGATTGATGGAACTTGAGAAAGGCATCAAACTTGGTTGTTTACCTTTCACAGAGATTGATGTGAGAAACTTGTTGCAGTCATTTAGAAATGTTGATAGAGACAATGATGCTATTGATCTTATTGCTATGTGCAAGAGATTGAAAGATGAAAATCACAACTTCAAGTATGAGTTTAAGATTGATAGTAATAACAGGCTAGAGCATATTGCCTGGTCGTATGCCTCATCTATTCAATTGTACGAGTCATTCGGAGATGCTGTGGTTTTTGATACAACACACCGTCTGGATGCCTATGACATGTTGTTGGGGATTTGGCTTGGAGTGGACAATCATGGAATGTCTTGTTTCTTTGGTTGTGCTCTTCTGCGGGATGAAAATATTCAGTCTTTTTCGTGGGCTCTGAAGGCATTATTAAGCTTCATCGAAGGAAAGGCTCCACAAACCATGTTAACGGATCATAACATGTGGCTCAAAGAAGCCATTGCTGTTGAAATGCCTGGAACCAAACATGCCTTTTGCATATGGCACATTATTGCCAAATTCTCTGACTGGTTCTCTGTACTTCTTGGATCACATTATGATGAGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAACTGGTGGAAGATTTTGAGGAAGGCTGGGGGCAAATGGTTGATAAATATGGACTCCATGCAAATAAGCACATTGTTAGCCTATACTCATTAAGGACATTTTGGGCCTTACCATTCTTGAGGTGCTACTTCTTTGCAGGATTGACTGGCACTAGTCAATCGGAGTCCATCAATGCTTTCATCCAACGGTTCTTGGGTGCCCAATCACAACTAGATCGCTTTGTAGAGCATGTTGCTGGTATTGTCGAATTTAATGACCGGGCTGGGTCAAAGCAAAAGATGCAACGAAAGCTGCAGAAAGTGTGCCTCAAAACTGGTTCACCTATTGAATCCCATGCTGCCACAATGCTTACTCCTTATGCCTTTAATAAACTGCAGGATGAGCTAGTTTTGGCACCACAATATGCATCCTTTCTGGTTGATGAAGGTTGCTTTCAGGTCAGACACCACACTCAGATGGATGGAGGGTGCAAAGTATTTTGGGTTCCTTGCCAAGAACACATGAGCTGCAGCTGCCGTCTGTTTGAGTTTTCTGGCATCTTATGCAGGCATATATTAAGAGTCATGTCAAATAACAACTGTTTTCACATTCCTGACCAGTATGTACCTTCCCGTTGGCGTAGTACCTGTTCATCTTCTGCTAACCCCTTCCGAGGTACAATTTCCAGGGATCATTCTGAAAGAATACAACTTTTGGAATCCATGGCTTCAACGCTTGTCATGGAATCCATTGAAACAGAGGAACGCTTTGGTGCTGCTTGCGAGCAAATCTCCATGGTTTTATCACGTATCAAAACCCTTCCTAGGTCAACACACGGGGTGAATGACATTGCCTATAATTATCAATCAGATTCATTGATTCTGCCGGAGGTGGATGATGCTGATGGTATAATTCATGGTTTTACAGTTGCAAATCCCCATGATTCTATCACTTTAGGAAAACTAAAGGAGAGAAGGGCAAGAGATGGAATTGATATAAGTAGGAAGCGAAAGCACATGTCAGGGCCGTTGTGTGGGCAATATGGACACGATGCATCCGATTGCTCGACGATGGCTGGTGATAATTTGAACGAAGATGCACTAGGTTACTCGTAG 2277 0.4251 MSKGTSLVLDSSENGTDLSQDDIGTIEETPEESILSRQTSVNLVPFLGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSDDGKMQRNRKSSRCGCRAYMRIVKRADFDVPEWRVTGFSNTHNHELLKSNEVRLLPAYCTISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYASSIQLYESFGDAVVFDTTHRLDAYDMLLGIWLGVDNHGMSCFFGCALLRDENIQSFSWALKALLSFIEGKAPQTMLTDHNMWLKEAIAVEMPGTKHAFCIWHIIAKFSDWFSVLLGSHYDEWKAEFHRLYNLELVEDFEEGWGQMVDKYGLHANKHIVSLYSLRTFWALPFLRCYFFAGLTGTSQSESINAFIQRFLGAQSQLDRFVEHVAGIVEFNDRAGSKQKMQRKLQKVCLKTGSPIESHAATMLTPYAFNKLQDELVLAPQYASFLVDEGCFQVRHHTQMDGGCKVFWVPCQEHMSCSCRLFEFSGILCRHILRVMSNNNCFHIPDQYVPSRWRSTCSSSANPFRGTISRDHSERIQLLESMASTLVMESIETEERFGAACEQISMVLSRIKTLPRSTHGVNDIAYNYQSDSLILPEVDDADGIIHGFTVANPHDSITLGKLKERRARDGIDISRKRKHMSGPLCGQYGHDASDCSTMAGDNLNEDALGYS 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4104g00179 758 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
Pral4104g00179 758 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 642 IPR031052 GO:0006355
Pral4104g00179 758 Pfam MULE transposase domain 275 367 IPR018289 -
Pral4104g00179 758 Pfam SWIM zinc finger 563 584 IPR007527 GO:0008270
Pral4104g00179 758 MobiDBLite consensus disorder prediction 1 32 - -
Pral4104g00179 758 SMART 26again6 562 589 IPR006564 GO:0008270
Pral4104g00179 758 MobiDBLite consensus disorder prediction 1 23 - -
Pral4104g00179 758 ProSiteProfiles Zinc finger SWIM-type profile. 554 587 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4104g00179 Pral-Chr4104 1186674 1190571 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pral4104g00179 MULE 6.5e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4104g00179 - - qsa:O6P43_021818 1388.24