Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4104g00175 ATGAATCTGACCAACGCCAAGGGATCCATGTCAACGGCCAGTTCTAGTACCCCTCGGAAATCAGTCGGTGACGGCGACCAGTTCCCGGCTGGGTTGCGGGTACTGGTGGTGGACGATGATCCCACGTGCCTTATGATCCTTGAGAAGATGCTTCGCAATTGTCTCTACGAAGTAACAAAATGCAATCGAGCTGAGGTTGCATTGTCCCTTCTGAGAGAGAACAAAAACGGGTTCGACATAGTTATAAGCGATGTGCATATGCCAGACATGGATGGCTTTAAGCTTTTAGAGCACATAGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCAGCAGATGATGGGAAAGATGTTGTTATGAAAGGTGTAACACACGGTGCTTGTGATTACCTAATAAAACCTGTGCGTATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAAAGAAAGAATGACTGGAAGGATTTGGAGCAATCCTATAGTGCAGAAGAAGGAGATCGGCAGCAAAAGGCCTCAGATGAAGCTGATTACTCGTCCTCAGCAAATGAAGGAAATTGGAGAAATGCAAAGAAGAAGAGAGACGAGGAGGAGGAAGCAGAGGAGAAGGATGATACTTCTACATTAAAGAAGCCACGCGTTGTTTGGTCCGTTGAGCTCCACCAACAGTTTGTGGCTGCTGTGAATCAACTGGGAATTGACAAGGCTGTTCCCAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACCAGAGAAAATGTTGCTAGCCATCTCCAGAAATATCGTCTATATCTGAGAAGACTCAGTGGCGTTTCTCAGCACCAGAGTAACATGAACAACTCTTTCATCAGTCCACAAGAAGCAACCTTTGGGACAATGTCAGCATTTAATGGAATAGATCTTCAAGCTCTTGCAGCTGCTGGTCAGCTTCCGGCACAAAGTCTGGCAGCACTTCAAGCAGCAGGACTTGGCAGATCAACTGCTAAAGTTGGAGTATCTGTGCCCCTTCTTGATGAAAGGAACCTTTTCAGCTTTGAAAACCCCAGATCAAGATTTGGAGATGGGCAACAGCAGCACCTCAGCAGTACTAAATCAACAAACTTGCTTCATGGAATTCCTACCAACATGGAGCCAAGGCAGCTTGCCAATTTGCACCAATCAACACAATCCCTTGGCAGCATGAATGTGCGAGTCAATGGATCTGCTGCACAGAGCAACTCTTTATTGATGCCAATGGCTCAACCTCAACCAAGAGGTCAGATGCTCAATGAAAATACTGCTTCGCATGTTCCAAGACTTCCATTATCTGTTGGGCTGCCTACTGTACCAAATGGAATTTCTAATGCTGCGTTGGCAAGAAATGGGATTGCTGGTAATAACAGAGGAGCTGCTTATAATCCTATTCCACAAACTTCTTCAATGTCGATTTTTCCCACAAACCAAACTTCAGAAGTGTCCGTCAGTAGTTTCCCACTTGGAAGCGCCCCGGGCATATCTAGTATCCCACCAAAAGGCGCATTTCAGGAGGAAGATACTTCGGGAGTTAAAGGATCTGGGGGATTTGTGCCAAGTTATGATATTTTTGATGAGCTGCACCAGCAAAAGCCTTTACATGACTGGGGACAAAATGTGGGCCTCACGTATGATACCCCTCAGCGTGCAAATCCTTTACACGGTAGCATTGATGTCTTGCCATCAGTTATAGTAAATCAGAGCTTTTCTTCCTCCGCCCAACAGACCGGACAGAATAGGAATTCTACTCTGATTGGAAAAGCCATGTACTCCCAAGGGAAAGGTTTGGAACAAGGAAATATCCAAAATATTGATCAAAACCTCCATCCACTCGTTGAAAATTCTACAAGGGTTAAGACTGAAATAATTTCTGATGCAAACTCTCATTCTAACTTCTTCCCCGATCATTATGGGCAGGATGATCTCATGAGTGCACTTCTGAAACAGCATGAAGGCATTGGAGCAGCTGAGAATGAATTTGACTTTGATGGATATTCCTTGGACAACATTCCCGTCTAG 2037 0.4497 MNLTNAKGSMSTASSSTPRKSVGDGDQFPAGLRVLVVDDDPTCLMILEKMLRNCLYEVTKCNRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKDVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNDWKDLEQSYSAEEGDRQQKASDEADYSSSANEGNWRNAKKKRDEEEEAEEKDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNMNNSFISPQEATFGTMSAFNGIDLQALAAAGQLPAQSLAALQAAGLGRSTAKVGVSVPLLDERNLFSFENPRSRFGDGQQQHLSSTKSTNLLHGIPTNMEPRQLANLHQSTQSLGSMNVRVNGSAAQSNSLLMPMAQPQPRGQMLNENTASHVPRLPLSVGLPTVPNGISNAALARNGIAGNNRGAAYNPIPQTSSMSIFPTNQTSEVSVSSFPLGSAPGISSIPPKGAFQEEDTSGVKGSGGFVPSYDIFDELHQQKPLHDWGQNVGLTYDTPQRANPLHGSIDVLPSVIVNQSFSSSAQQTGQNRNSTLIGKAMYSQGKGLEQGNIQNIDQNLHPLVENSTRVKTEIISDANSHSNFFPDHYGQDDLMSALLKQHEGIGAAENEFDFDGYSLDNIPV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4104g00175 678 FunFam Two-component response regulator 32 169 - -
Pral4104g00175 678 PIRSF RR_ARR_type-B 7 670 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pral4104g00175 678 MobiDBLite consensus disorder prediction 1 22 - -
Pral4104g00175 678 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Pral4104g00175 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 268 IPR017930 -
Pral4104g00175 678 Gene3D - 209 271 - -
Pral4104g00175 678 FunFam Two-component response regulator 208 271 - -
Pral4104g00175 678 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Pral4104g00175 678 SUPERFAMILY CheY-like 31 152 IPR011006 -
Pral4104g00175 678 MobiDBLite consensus disorder prediction 161 175 - -
Pral4104g00175 678 MobiDBLite consensus disorder prediction 352 373 - -
Pral4104g00175 678 MobiDBLite consensus disorder prediction 161 209 - -
Pral4104g00175 678 Gene3D - 32 170 - -
Pral4104g00175 678 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Pral4104g00175 678 MobiDBLite consensus disorder prediction 1 24 - -
Pral4104g00175 678 SMART REC_2 32 144 IPR001789 GO:0000160
Pral4104g00175 678 CDD REC_typeB_ARR-like 34 148 - -
Pral4104g00175 678 MobiDBLite consensus disorder prediction 188 209 - -
Pral4104g00175 678 Pfam Response regulator receiver domain 34 142 IPR001789 GO:0000160
Pral4104g00175 678 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Pral4104g00175 678 MobiDBLite consensus disorder prediction 351 373 - -
Pral4104g00175 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 321 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4104g00175 Pral-Chr4104 1150003 1153625 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4104g00175 66 678 Response Regulator Gene Family AT3G16857 49.772 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pral4104g00175 Response_reg 5.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4104g00175 - K14491 gmx:100814930 1035.02