Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4104g00155 ATGCTTCTCCTATTTCGAAGGCATCCAGTACTGCATCGAACAAGAAATCGAGATTTTTCTTCCTCTTTGTTTCTTTCTCTCTCTGTTGTGATCATCATGTGTGGAGGTGCTATCATTTCCGACTTCATTGCCGTCAAGCGAGGCCGGAAACTTACCGCCGGCGACCTTTGGTCCGAGCTCGACCCTTTCTCCGACCTCCTTGGCTTCGATGCTCACGCCGGTTCTGCCAAAAACCATCCGCCTCAGAAACTCCCCCAGGTCCCATTCAATAAAGGGGCGTGTGAGAAGAAGGAGAAGAAAAGCGTGAAAGCAGAGAAAGCTGGCGGGAAGAAGAGCACCGGTCAGAGAACACGCAAGAACGTGTACAGAGGAATAAGGCAGAGGCCGTGGGGCAAGTGGGCCGCGGAGATAAGGGACCCGCACAAGGGCGTCCGAGTGTGGCTCGGCACCTACAACACCGCCGAAGAAGCCGCCAGAGCCTACGACGAAGCCGCCAAGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCGGCAGTGGAGAGACCCGCCAAGAAGCGCTGCCTGAGCCCACAGTCGAGCGAGGAGAGCAGCAGCCACCAGGGTGGACCGCCGACGCCGTACCAGTCGGATCTGGAGCTGAAGCAGCACATCTCAGACCTGGAGTCCCTGCTGGGGCTGGAGCCGGAGGAAGAGACGATGAGCGATCAGCAGCAGGTGATGAGCGGCGGAGGGAGCTGCGATGGCGGGGAGTGGGCGGAGTCAGTGGACCTGTGGATGCTGGAGGACGTCATGATGAATCACATGCCAAACAGCGAGCTGCTGTATTAA 831 0.5812 MLLLFRRHPVLHRTRNRDFSSSLFLSLSVVIIMCGGAIISDFIAVKRGRKLTAGDLWSELDPFSDLLGFDAHAGSAKNHPPQKLPQVPFNKGACEKKEKKSVKAEKAGGKKSTGQRTRKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTYNTAEEAARAYDEAAKRIRGDKAKLNFPAVERPAKKRCLSPQSSEESSSHQGGPPTPYQSDLELKQHISDLESLLGLEPEEETMSDQQQVMSGGGSCDGGEWAESVDLWMLEDVMMNHMPNSELLY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4104g00155 276 CDD AP2 122 180 IPR001471 GO:0003700|GO:0006355
Pral4104g00155 276 MobiDBLite consensus disorder prediction 190 206 - -
Pral4104g00155 276 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Pral4104g00155 276 SUPERFAMILY DNA-binding domain 121 178 IPR016177 GO:0003677
Pral4104g00155 276 MobiDBLite consensus disorder prediction 182 211 - -
Pral4104g00155 276 MobiDBLite consensus disorder prediction 95 112 - -
Pral4104g00155 276 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Pral4104g00155 276 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Pral4104g00155 276 PANTHER DNA-BINDING DOMAIN 98 216 IPR044808 GO:0003700|GO:0009873
Pral4104g00155 276 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Pral4104g00155 276 MobiDBLite consensus disorder prediction 95 118 - -
Pral4104g00155 276 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Pral4104g00155 276 Gene3D AP2/ERF domain 121 180 IPR036955 GO:0003700|GO:0006355
Pral4104g00155 276 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4104g00155 Pral-Chr4104 996086 1006298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4104g00155 33 268 AP2-EREBP Transcription Factor Family AT3G16770 42.857 3.17e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4104g00155 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4104g00155 K09286 - tcc:18603555 226.098