Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4104g00080 ATGTTCAGTCCGAGCATGGATTCTGCAAGGGACACAGGAGGTGTTGCAGGCACGGTGCTAATCCCGATGCGTTTTGTGTGGCCATATGGGGGAAGAAGTGTCTATCTCAGTGGTTCTTTTACACGGTGGTCTGAGCTTCTACCAATGTCGCCCGTCGAGGGTTGTCCAACTGTATTTCAAGTTATATATAGCTTGACCCCCGGTTACCATCAGTACAAGTTTTTTGTTGATGGGGCATGGCGACATGATGAACATCAACCTTATGTACCTGGAGAATATGGGATGGTTAACACTGTTTTGTTGGCTACTGATCCTAATTACATGCCTGTTGTAACACCAGACCTAACTTCTGGATCAAACATGGATGTGGATAATGATGCTTTTCGACGTGTGGTCCGCTTGACAGACGGGACATTGACAGAAGTATTGCCAAGAATATCTGATGCTGATGTCCAGATATCCCGTCAGCGCATTACTGCATTCTTGACCATGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCTTTGGACATTGATCTGCCAGTGAAACAAGCATTTCACATTTTGCATGAGCAGGGAATCCCTATGGCTCCTCTTTGGGACTTCAGCAAAGGGCTGTTTGTTGGTGTTCTCAGTGCTATGGATTTTATTTTAATTTTGAGAGAGCTTGGAAATCATGGTTCCAATCTGACAGAAGAGGAACTTGAAACACATACCATATCTGCTTGGAAAGAAGGAAAATCATATCTTAGTAGACAAAACAATGGACCAGGAACAGCATTTTCAAGACGTTTTGTTAGTGCTGGGCCGTATGATAATTTAAAGGATATTTCCTTGAAGATCCTGCAAAATGGAGTTTCGACTGTTCCTATTATCCATTCATCTTCTGAAGATGGTTCATTTCCACAGTTATTACACCTTGCTTCGCTTTCTGGAATACTTAAATGCATTTGCAGGTATTTCAGGCATTGTACCAATACATTGCCTATTCTTCAACTACCCATTTGTGCAATTCCAGTGGGCACATGGGTGCCCAAAATTGGGGAGTCAAATCGGCAGCCCTTGGCAATGTTGAGACCAAGTGCTTCTCTTGCTTCAGCCCTAAATTTGTTGGTTCAAGCACAAGTAAGTTCAATACCAATAGTCGATGATAATGACTCATTATTGGATATATATTGTCGGAGTGATATAACAGCTTTGGCAAAGGACAGAGCTTATACACATATTAAGCTTGATGAAATGACCGTTCATCAGGCGTTGCAATTGGGTCAGGATTCTTACCAGCCTTATGAACTGAGAAGTCAAAGATGTCAAATGTGCTTGCGATCTGATTCTCTGCATAAAGTGATGGAACGGCTGGCTAATCCAGGTGTCAGGCGGCTAGTCATCGTGGAAGCCGGTAGCAAGCGTGTAGAGGGCATTGTTTCACTGACTGACGTAGTCAAATTCTTGCTTGGTTAG 1473 0.4325 MFSPSMDSARDTGGVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLPMSPVEGCPTVFQVIYSLTPGYHQYKFFVDGAWRHDEHQPYVPGEYGMVNTVLLATDPNYMPVVTPDLTSGSNMDVDNDAFRRVVRLTDGTLTEVLPRISDADVQISRQRITAFLTMHTAYELLPESGKVVALDIDLPVKQAFHILHEQGIPMAPLWDFSKGLFVGVLSAMDFILILRELGNHGSNLTEEELETHTISAWKEGKSYLSRQNNGPGTAFSRRFVSAGPYDNLKDISLKILQNGVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRHCTNTLPILQLPICAIPVGTWVPKIGESNRQPLAMLRPSASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHIKLDEMTVHQALQLGQDSYQPYELRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLTDVVKFLLG 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4104g00080 490 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Pral4104g00080 490 ProSiteProfiles CBS domain profile. 436 490 IPR000644 -
Pral4104g00080 490 ProSiteProfiles CBS domain profile. 354 415 IPR000644 -
Pral4104g00080 490 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 150 488 - -
Pral4104g00080 490 CDD E_set_AMPKbeta_like_N 22 100 - -
Pral4104g00080 490 SUPERFAMILY CBS-domain pair 158 328 IPR046342 -
Pral4104g00080 490 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Pral4104g00080 490 Gene3D - 338 490 IPR046342 -
Pral4104g00080 490 Pfam CBS domain 357 402 IPR000644 -
Pral4104g00080 490 Pfam CBS domain 443 489 IPR000644 -
Pral4104g00080 490 SUPERFAMILY CBS-domain pair 356 489 IPR046342 -
Pral4104g00080 490 Gene3D - 147 331 IPR046342 -
Pral4104g00080 490 SMART cbs_1 440 489 IPR000644 -
Pral4104g00080 490 SMART cbs_1 358 406 IPR000644 -
Pral4104g00080 490 SMART cbs_1 176 225 IPR000644 -
Pral4104g00080 490 SUPERFAMILY E set domains 21 102 IPR014756 -
Pral4104g00080 490 Gene3D Immunoglobulins 21 111 IPR013783 -
Pral4104g00080 490 ProSiteProfiles CBS domain profile. 170 232 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4104g00080 Pral-Chr4104 491914 499520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4104g00080 11 111 Protein tyrosine phosphatase (PTP) family AT3G01510 30.769 3.38e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4104g00080 - - gmx:100785692 867.07