Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4104g00072 ATGGAGCGGTACGGCCGGGCGAGTGACGAGTCGCAGTCCGATCCGTCGCCGGAATGGACTGGAACCGGAGGCGAAACAGGGCTTGAAGAATCTATGCGGCAATTGGGATTGGTTGGTGGGGAATCGTATCCACAACGGCCCTATGAGGCAGATTGTATCCACTATTTGAAGACAGGGTTTTGTGGCTATGGCTCACGGTGTCGGTTCAATCATCCCCGTGACCGTGGCGCGGTTATAGGAGCTTTGAGGACTGTTATGGAGTATCCAGAGCGAGTCGGCCAGCCTGTATGTCAGTATTATATGAGGACACGATCTTGCAAATATGGTGCTTCATGTAAGTACCACCATCCTAGGCAGGAAGGAGGAGTTGCTCCTGTTCCACTTAATTATTATGGATACCCAATGCGACCGGATGAGAAAGAGTGTTCGTATTATGTGAAAACAGGACAATGCAAGTTTGGCACAACTTGTAAGTTTCATCACCCACAGCCTGCTGGTGTTCAAGTTCCTGCGCCATTACCAGTTCCCCAAGCTTCAACTCTACCTGTACGAGTACCTTCACCATTCTATCCACATATGCAGCCTCCATCTGGTCCTTCATCACAACAATATGGTGTAATGGTTGCAAGACCACCTCTGCTACCAGGGTCATTAGTCCAAAATCCTTACGGGCCTGTGGTCATGTCCCCTGTCCCTTTTTCAGGCTGGAATCCTTATCAGGCTCATACAAGCCCAGCAGTTCCTTCTAGTACTCCCTCTAATGTTGGCTCAACGCACCTTTATGGAAATACCCAGCTACCTTCACCCGCACCTCCCTATACTGCACTTTACCAGCCTTCGGGTTCCTCATTTGGCCCCTTGAGCACCAGTCAGAGAGAACAGCATTCATTTCCAGAAAGACCTGGTCAACCAGAATGTCAGCATTACATGAGAACAGGGGAGTGTAGATTTGGTCCTTCCTGCAGATATCATCATCCACCTGAATTGATTATACCAAATGTGAATGTGGTCCTTAGTCCTGTTGGTCTTCCTATGCGCCCGGGCGCACCACCTTGCATCCATTATGAGCAGCGAGGGGTATGTAAGTTTGGTCCTGCATGCAAGTTTGATCATCCTATGGGAGCACTGACTTACAGTCCATCTGCTTCTTCCCTTGTTAATGTGCCTGTTGTATCCATTCCTGTGGGTTCATCCATCAGTACTCCTGCACGATCATCCTCGTCATCAGAGCTGCGGCCTGAACTCAGCCCTGGTTCAAGCATGGAGCATGGATCATTCAGAATATCTTCATCAATGAGCACATCCACTGGATCAGCAGGCTTGGCTTTGTCATCTGGTGGAACTGTTTCTCAGTCAAATACTCAAACATCCACCCAAAGTTCTGTTCCGGTAGTGACTTCCACGATCACGACAACAAGCAGCACTGTTTCTCATACCCCAAGCTAA 1446 0.4917 MERYGRASDESQSDPSPEWTGTGGETGLEESMRQLGLVGGESYPQRPYEADCIHYLKTGFCGYGSRCRFNHPRDRGAVIGALRTVMEYPERVGQPVCQYYMRTRSCKYGASCKYHHPRQEGGVAPVPLNYYGYPMRPDEKECSYYVKTGQCKFGTTCKFHHPQPAGVQVPAPLPVPQASTLPVRVPSPFYPHMQPPSGPSSQQYGVMVARPPLLPGSLVQNPYGPVVMSPVPFSGWNPYQAHTSPAVPSSTPSNVGSTHLYGNTQLPSPAPPYTALYQPSGSSFGPLSTSQREQHSFPERPGQPECQHYMRTGECRFGPSCRYHHPPELIIPNVNVVLSPVGLPMRPGAPPCIHYEQRGVCKFGPACKFDHPMGALTYSPSASSLVNVPVVSIPVGSSISTPARSSSSSELRPELSPGSSMEHGSFRISSSMSTSTGSAGLALSSGGTVSQSNTQTSTQSSVPVVTSTITTTSSTVSHTPS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4104g00072 481 ProSiteProfiles Zinc finger C3H1-type profile. 346 374 IPR000571 GO:0046872
Pral4104g00072 481 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Pral4104g00072 481 MobiDBLite consensus disorder prediction 1 27 - -
Pral4104g00072 481 MobiDBLite consensus disorder prediction 397 481 - -
Pral4104g00072 481 SMART c3hfinal6 138 163 IPR000571 GO:0046872
Pral4104g00072 481 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Pral4104g00072 481 SMART c3hfinal6 346 373 IPR000571 GO:0046872
Pral4104g00072 481 SMART c3hfinal6 47 73 IPR000571 GO:0046872
Pral4104g00072 481 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Pral4104g00072 481 MobiDBLite consensus disorder prediction 242 303 - -
Pral4104g00072 481 SUPERFAMILY CCCH zinc finger 349 376 IPR036855 GO:0046872
Pral4104g00072 481 Gene3D - 45 121 - -
Pral4104g00072 481 SUPERFAMILY CCCH zinc finger 92 120 IPR036855 GO:0046872
Pral4104g00072 481 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Pral4104g00072 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Pral4104g00072 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Pral4104g00072 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 373 IPR000571 GO:0046872
Pral4104g00072 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Pral4104g00072 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Pral4104g00072 481 SUPERFAMILY CCCH zinc finger 51 74 IPR036855 GO:0046872
Pral4104g00072 481 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Pral4104g00072 481 SUPERFAMILY CCCH zinc finger 135 164 IPR036855 GO:0046872
Pral4104g00072 481 MobiDBLite consensus disorder prediction 422 481 - -
Pral4104g00072 481 PANTHER PROTEIN PHOSPHATASE RELATED 29 408 - -
Pral4104g00072 481 SUPERFAMILY CCCH zinc finger 304 327 IPR036855 GO:0046872
Pral4104g00072 481 MobiDBLite consensus disorder prediction 242 297 - -
Pral4104g00072 481 MobiDBLite consensus disorder prediction 397 415 - -
Pral4104g00072 481 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Pral4104g00072 481 Gene3D - 122 170 - -
Pral4104g00072 481 Gene3D - 289 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4104g00072 Pral-Chr4104 474996 479887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4104g00072 1 422 C2H2 Transcription Factor Family AT5G18550 55.479 3.60e-142 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4104g00072 zf-CCCH 4.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4104g00072 - - gmx:100789405 610.912