Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4104g00069 ATGCCAAGCTCCAGAGCCTCAGAGAACAAAACCCAGATGGGTTTGTGTCTTCTTCAAACCAACCCATCTTCTTCTAGTGAGAGAAGAGGGCGAAAAAAGCAAGGAGAAGCAGGAAGATTTCTGGGGGTGAGAAGACGACCTTGGGGAAGATATGCTGCAGAAATTAGAGACCCCGCAACTAAAGAAAGGCACTGGCTTGGGACTTTTGATACTGCTCAAGAAGCTGCTTTAGCTTATGACAGAGCTGCTTTGTCCATGAAAGGATGCCAAGCAAGAACCAACTTCGTATACACTACTGACAATACAACCTTTGACAATACTCTTCTTTGTCCCTTTGATGTTCAGCTTCAGTCACTCTTTAACACTACTCAGATGAAACAGTCAATCAACCAGAACAGGCCACCTCAGCTTTCTGAGACTTCCCAGATTGAGACTACTGCTGCATGTGATTCTTCTTCAGCTCAGGAGGCTGATAGCTTACTCTTCTTCTCCAATGGTGATTCTAAGTCAGGTTACTTGGAATGCATAGTTCCTGATGTCTGTTTCAGACCACCACCATCTTCTTCTAATGATAGCAACAGTTCAAACTCCATAAAGAACAATGGTGCCTTAATTCCCTGTGCCGATGCAAATGACCAAAAGATATCTCAAGAAGCTGTGAAGAACATGGCTTCAAGCTATGGAAATTTCACCTATCCAAATGAACTCGGGCAAGAAACATTCTGGGACTGGAGCTGCAGTGAACTTGCTGCTATATTTAACAGTCCATTAAAGGTTGAAGACACAGACACTTCAAGCTGCGGGATAATCTCTCAGGCTGCTGCAACTGCTCCATCAACCACTTATGCTCCATCACTTCCTTCATTTGATGTTGATTTGGCATACACACTCTTCTGA 897 0.4392 MPSSRASENKTQMGLCLLQTNPSSSSERRGRKKQGEAGRFLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAQEAALAYDRAALSMKGCQARTNFVYTTDNTTFDNTLLCPFDVQLQSLFNTTQMKQSINQNRPPQLSETSQIETTAACDSSSAQEADSLLFFSNGDSKSGYLECIVPDVCFRPPPSSSNDSNSSNSIKNNGALIPCADANDQKISQEAVKNMASSYGNFTYPNELGQETFWDWSCSELAAIFNSPLKVEDTDTSSCGIISQAAATAPSTTYAPSLPSFDVDLAYTLF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4104g00069 298 MobiDBLite consensus disorder prediction 127 149 - -
Pral4104g00069 298 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Pral4104g00069 298 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Pral4104g00069 298 MobiDBLite consensus disorder prediction 1 38 - -
Pral4104g00069 298 CDD AP2 39 95 IPR001471 GO:0003700|GO:0006355
Pral4104g00069 298 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 205 - -
Pral4104g00069 298 FunFam Ethylene-responsive transcription factor 2 39 97 - -
Pral4104g00069 298 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Pral4104g00069 298 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Pral4104g00069 298 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Pral4104g00069 298 MobiDBLite consensus disorder prediction 1 25 - -
Pral4104g00069 298 Pfam AP2 domain 42 88 IPR001471 GO:0003700|GO:0006355
Pral4104g00069 298 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4104g00069 Pral-Chr4104 456554 457450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4104g00069 10 193 AP2-EREBP Transcription Factor Family AT5G18560 42.678 5.54e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4104g00069 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4104g00069 - - pcin:129309284 448.358