Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4104g00044 ATGGAAGGCTATGACAATGAACGTCTTGGTTTTGGGAAGATGGGATACGGGTGCAAGCACTACAGGAGAAGATGCAAGATTCGGGCACCCTGCTGCAACGAACTGTATTCCTGCCGACATTGTCATAACGAGGCAACGAGCATGTTGAGGAACCCCTTTGATCGACACGAAATGGTTCGCCAAGACGTGAAACAAGTTGTTTGTTCAGTTTGCGATACAGAGCAGCCAATTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACACATGCAAATTCTTCGATGATGATACGGAGAAACAGCAGTTTCATTGTGATGATTGTGGAATTTGCAGAATTGGTGGTCGTGATAACTTTTTCCACTGCAACAAGTGCGGGTCTTGCTATTCGCTTGGTCTACTTGATAATCATTTATGTGTAGAGGACTCCATGAGGCATCACTGTCCGATATGTTATGAGTACCTTTTTGATTCAGTGAAGGACACTACCGTTATGAAATGTGGTCACACAATGCATTGTGAATGTTTCCAAGAGATGATAAAAAGGGAAAAGTATTGTTGCCCCATATGCTCCAAGTCAGCGATTGACATGTCCATGTACTGGAAGATGATTGACGAAGAGGTGGAAGCAACTCTTATGCCTGAAGATTATCGCCACAGGAAGGTTTGGATACTGTGTAATGATTGTAATGACACAACTGAAGTATACTTCCACATAGTTGGGCAAAAATGTGGCCACTGCAGATCATATAACACTCGTGAAATTGCTCCACCTGTTCTTCCTCAATGA 804 0.4316 MEGYDNERLGFGKMGYGCKHYRRRCKIRAPCCNELYSCRHCHNEATSMLRNPFDRHEMVRQDVKQVVCSVCDTEQPIAQVCTNCGVKMGEYFCNTCKFFDDDTEKQQFHCDDCGICRIGGRDNFFHCNKCGSCYSLGLLDNHLCVEDSMRHHCPICYEYLFDSVKDTTVMKCGHTMHCECFQEMIKREKYCCPICSKSAIDMSMYWKMIDEEVEATLMPEDYRHRKVWILCNDCNDTTEVYFHIVGQKCGHCRSYNTREIAPPVLPQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4104g00044 267 SUPERFAMILY CHY zinc finger-like 16 87 IPR037274 GO:0008270
Pral4104g00044 267 Gene3D - 227 262 - -
Pral4104g00044 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Pral4104g00044 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 264 - -
Pral4104g00044 267 FunFam RING finger and CHY zinc finger domain-containing protein 1 224 265 - -
Pral4104g00044 267 SUPERFAMILY RING/U-box 152 204 - -
Pral4104g00044 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Pral4104g00044 267 SMART ring_2 153 195 IPR001841 -
Pral4104g00044 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Pral4104g00044 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Pral4104g00044 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 226 IPR013083 -
Pral4104g00044 267 Pfam Ring finger domain 152 195 IPR001841 -
Pral4104g00044 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Pral4104g00044 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4104g00044 Pral-Chr4104 320408 324208 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4104g00044 13 266 C2H2 Transcription Factor Family AT3G18290 41.923 2.10e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4104g00044 K10144 - gmx:100792038 537.724