Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4104g00035 ATGCCTATTATCAGGAGCACAACCTGTGATATGAGATCGAGGTCCCACCGGGTGTTACAGGACGGTTCGGTGGAGCTGGTGGTCACCGATGGCCTGAAGCAGAGCTGCTGGGCCAACATACCACAGGAGCTTCTCAGAGAAGTGTTGGCCAGAATCGAAGCATCCGAAAGCTCTTGGCCTGCTCGCCGGAGCGTGGTGGCTTGCGCCGGTGTCTGCCGCACTTGGAGGTTCATCACTAAGAGCATCGTCAACACGCTTCAAGTTTCCTCGAATATCACCTTCCCCATCTCTGTTAAGCAGCATGGCCCGAGGGAAAATCCCCTCCGGTGCTTCATAAAGCGCAACAGGTCAACCCAGACATATTGTTTGTTTCTCAGTTTAACTAACGCATTAAGTGATGATGATGGGAAGTTTCTTCTGGCAGCACGCAAGTGTAGACGTGCCACCTGCACAGATTATATCATCTCTCTTGATGCTGATGATGTGTCAAAGGAAAGAAACACTTGTGTTGGGAAACTGAGATCAAATTTTCTGGGAACGAAGTTCACAATTTATGATGCCCAATCACCTCACAAAGGGGCAAAGACTACAAAAAGCCGCTCCGCTAGACTGGGAAATCTAAATCAAGTTTCACCCAAGGTTTCTACTGGTAACTGTCCAGTGGCACACATATTATATGAATTAAATGTGCTAGGCTCCAGGGGCCCAAGGAGAATGAAATATGTCATGGACACCACTCCTGCCACTGCAATTCAACCAGGAGGGGTGAGACAAGCTGCACAGACTGGGTTTTCTCCGACCAATGTTGAAAAAGTTCCATCATTCCCATTTTTTAGGTCAAAATCAAATAGGGTTGAGAACTGTAAATCTAGATCCCGGGGCAATGATGAGGCACTAGTGTTAATAAGCAAGCCTCCAAGGTGGCACGAGCAGCTCCAATGTTGGTGTTTGAACTTCAAAGGACGAGTGACAGTTGCTTCAGTTAAGAACTTTCAGCTGGTAGCTTCCCCAGGAAATGGACCTTCTGGAGCAGAACATGAGAAGATCATCCTCCAATTTGGAAAAGTAGGGAAGGATTTGTTTACAATGGATTACCAGTACCCCATCTCAGCATTTCAGGCTTTTGCAACCTGCCTCAGCAGCTTTGAAACCAAAATTGCTCGTGAATGA 1170 0.4735 MPIIRSTTCDMRSRSHRVLQDGSVELVVTDGLKQSCWANIPQELLREVLARIEASESSWPARRSVVACAGVCRTWRFITKSIVNTLQVSSNITFPISVKQHGPRENPLRCFIKRNRSTQTYCLFLSLTNALSDDDGKFLLAARKCRRATCTDYIISLDADDVSKERNTCVGKLRSNFLGTKFTIYDAQSPHKGAKTTKSRSARLGNLNQVSPKVSTGNCPVAHILYELNVLGSRGPRRMKYVMDTTPATAIQPGGVRQAAQTGFSPTNVEKVPSFPFFRSKSNRVENCKSRSRGNDEALVLISKPPRWHEQLQCWCLNFKGRVTVASVKNFQLVASPGNGPSGAEHEKIILQFGKVGKDLFTMDYQYPISAFQAFATCLSSFETKIARE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4104g00035 389 ProSitePatterns Tub family signature 1. 319 332 IPR018066 -
Pral4104g00035 389 Pfam Tub family 98 384 IPR000007 -
Pral4104g00035 389 SUPERFAMILY Tubby C-terminal domain-like 88 387 IPR025659 -
Pral4104g00035 389 SUPERFAMILY F-box domain 30 81 IPR036047 GO:0005515
Pral4104g00035 389 PANTHER TUBBY-RELATED 29 387 - -
Pral4104g00035 389 CDD F-box_AtTLP-like 37 80 - -
Pral4104g00035 389 Gene3D Tubby Protein; Chain A 93 389 IPR025659 -
Pral4104g00035 389 Pfam F-box domain 37 84 IPR001810 GO:0005515
Pral4104g00035 389 PRINTS Tubby superfamily signature 319 335 IPR000007 -
Pral4104g00035 389 PRINTS Tubby superfamily signature 346 365 IPR000007 -
Pral4104g00035 389 PRINTS Tubby superfamily signature 301 318 IPR000007 -
Pral4104g00035 389 PRINTS Tubby superfamily signature 367 389 IPR000007 -
Pral4104g00035 389 PRINTS Tubby superfamily signature 169 193 IPR000007 -
Pral4104g00035 389 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Pral4104g00035 389 PRINTS Tubby superfamily signature 153 169 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4104g00035 Pral-Chr4104 269512 273428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4104g00035 12 389 TUB Transcription Factor Family AT2G47900 65.183 2.16e-169 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral4104g00035 Tub 3.5e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4104g00035 K19600 - gmx:100778346 555.444