Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4104g00005 ATGAATAGCGTCTTCTTCTTCTCTGAAGCTGAAAGACTCGATTTCCTCCAATCCGTACTTAACACTTATGGCTGCGCTTATGTCTGCCTCTGGTTCTATAGTTCCTCATCCAATCGGCTGCTCTTCTTGGATGGTTTGTGCGACGTGCCAAACCAGCAAGCAATCTCTTCTCTGGGACTGGTGGGGAACTTTGATCAGAGGCTTTTCGACCAATATAGGGGTTTGGAATTTGATGTCACTTCTGATAATGGCGTTCCAGGACTAGCTTTTCGGAACCACCAATATGCCTGCCTTGAGCTGCAACAATCCGATCTGTTAAGACTGGCACGGACAGATCTACAAAGACGGTTCTTTCATGAAGCAAGGATTAAGACAGCTGTTTTCATAGGTTGCGGCAATGGGGAAGTTGAGCTTGGTTTCTCAGTTATCTCTCAAGGTGCTGAGATTCAAGCAGATGTGATGAGGAACTTGTTTCCAGAAGAATTTTCTAGACAGTCGCATCCAGCTGAACTGAAGTATCCATCTTCATCGTCTTCATCTTCTTTGAGGTCATTATCCACTGCCAGAAGTCCCGAATCCACATCCCTCCCATTCGCTAATATTCCGGGCACTTCTCTCTTGCCTGAAATGCTGCCGATCAAACAAGAGACTGAACACGACGCGATAGTTAGAGCTTTTATTCATGTTATATCTTCGCCTTCTTCTTCTTCTAATAATTCAGCCTTTCATCAGCAAAATCTGCCTAATAATATACATCCAGAAGGAACCAGTGCTTTTACAAGGTACATACCTTCAGAAATGAGTTCCAAACCCGGTTTGATGAGCAGGAAGCAAAGCTTGCTCAAGAGATCATTCGAATTGTTTAGAGGCTTACATTACATGAGAAATATGAGAGAGCGTTATCAAACAGGTCGTCCCTCTAGCACCCAGCTCCTTCATATGATATCAGAACGAAGAAGACGTGAGAGGCTCAATCAGAATTTTCAGGCACTTCGGTCACTACTCCCTCCAGGAACCAAGAAAGACAAAGGCTCAATACTTACAGCAGCAAAGGAGACATTGAACTCTTTGATGGCGGAGATTGAAAAGATAACCAACGAAGATCAGAAAGAGGAGGCACAAATGAAATCCAAGCAGTTATTAACAGATCAAGAAATGAAAATCAGTCCCTCGACCGAAAGATTCAGTGTGCGAGTTTCAGATGTGCCAGGGTCGAGTTCATCAGATGAAAGATTCATCCACCTGCAAGTGACTGTGAGAGGACAAATCTATTCTCAGGTCGAGATGTTGATTCGCTTATTGGAATTCTTGAAAGGGGTTCAGATAGTGAGCTTAGTTTCTGTAGAAGCTAACACCCATATAGCACAAGGAGCCGCCGTTAATGAAGCAACTTTAAGGCTGAAAATAGAGGGGAGTGAATGGGATGAGGCTGCTTTCAGAGAAGCAGTGAGAAGAGTGATTGCTGACCTGGCAGGGTGA 1479 0.4415 MNSVFFFSEAERLDFLQSVLNTYGCAYVCLWFYSSSSNRLLFLDGLCDVPNQQAISSLGLVGNFDQRLFDQYRGLEFDVTSDNGVPGLAFRNHQYACLELQQSDLLRLARTDLQRRFFHEARIKTAVFIGCGNGEVELGFSVISQGAEIQADVMRNLFPEEFSRQSHPAELKYPSSSSSSSLRSLSTARSPESTSLPFANIPGTSLLPEMLPIKQETEHDAIVRAFIHVISSPSSSSNNSAFHQQNLPNNIHPEGTSAFTRYIPSEMSSKPGLMSRKQSLLKRSFELFRGLHYMRNMRERYQTGRPSSTQLLHMISERRRRERLNQNFQALRSLLPPGTKKDKGSILTAAKETLNSLMAEIEKITNEDQKEEAQMKSKQLLTDQEMKISPSTERFSVRVSDVPGSSSSDERFIHLQVTVRGQIYSQVEMLIRLLEFLKGVQIVSLVSVEANTHIAQGAAVNEATLRLKIEGSEWDEAAFREAVRRVIADLAG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4104g00005 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Pral4104g00005 492 MobiDBLite consensus disorder prediction 169 197 - -
Pral4104g00005 492 Pfam Helix-loop-helix DNA-binding domain 313 357 IPR011598 GO:0046983
Pral4104g00005 492 Coils Coil 347 374 - -
Pral4104g00005 492 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 369 IPR036638 GO:0046983
Pral4104g00005 492 CDD bHLH_AtbHLH_like 313 363 IPR045239 -
Pral4104g00005 492 MobiDBLite consensus disorder prediction 168 197 - -
Pral4104g00005 492 Gene3D - 308 384 IPR036638 GO:0046983
Pral4104g00005 492 SMART finulus 314 363 IPR011598 GO:0046983
Pral4104g00005 492 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 110 489 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4104g00005 Pral-Chr4104 65193 68779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4104g00005 5 491 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.817 8.86e-87 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4104g00005 HLH 5.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4104g00005 - - pcin:129308826 660.603