Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4104g00004 ATGGATGGTTTATATGACGTAAGAAGCCATCAAGCAAGCTCTTCTCTGGGGTGTGTTGATCGAAGGCTTTTTGGTCAATATAGGGGTTTGGAATTTGATGTCACTTCTGAAAATTCCCTCTCCAATTACTTGGCTTCCTGTTTTATCAGCCGCGTTCCAGGACTGGCTTTTTGGAACCGATATTCTTTCCTAGAGCTGCAACAATCCGATCTCCTGCAACTGGCATGGACAGATATAAAAAGACAATTCTTTCAGACAGCTGTTTTCATAGGTTGTGGCAATGGGGAAATTGAGCTCGGATTCTCATGTGTCTCTCACGTCAGTAACGATGCTGAGATTCAAACAGATGTGCACGTACTACTGGTTTCCAGAAGAATTTCTGTACAGTCCCATCAAGTTGAACAGAAGATTCTACCTTCATCTTCATCTTGTCTGAGATCACTATCTACAGGCAGCTCCGATACACATTTCTCCTATTCAGCTTTGGTGCCTGAAATGCTTCTGCAGCAAGAGAATGACCACAACGGCGTTATTAAAGCAATTCTTCATGTTAAATCTTCGCCTTCTTCTAATAATAATTCAAGCTTAGTACTTGAGCAAGATCCGCCTAATATTGTAATTCCAGAAAGAGTTAGTGCTTTCAAGAGTTACAGGCCTTCTCGAATGGGTCATTACAAACCCAGTTTGCGAAGGCAAAGCTTGCTCAAGAGATCTTTTGAACTGCTTAGAGGCTTATATTTTATGAGAACGAGGGGGAATAATGAACAATCTTGTCACATTGGCAGCCAGTTCCTTCATGTGATGTCAGAACGAAGAAGGCGAGAGAAACTAAATCGGAATTTTGAGGCACTTAAATCACTGCTCCCTCCAGAAACCAAGGCTCTTTGGCTTCTCAAAGAATGGGTTTACTGA 912 0.42 MDGLYDVRSHQASSSLGCVDRRLFGQYRGLEFDVTSENSLSNYLASCFISRVPGLAFWNRYSFLELQQSDLLQLAWTDIKRQFFQTAVFIGCGNGEIELGFSCVSHVSNDAEIQTDVHVLLVSRRISVQSHQVEQKILPSSSSCLRSLSTGSSDTHFSYSALVPEMLLQQENDHNGVIKAILHVKSSPSSNNNSSLVLEQDPPNIVIPERVSAFKSYRPSRMGHYKPSLRRQSLLKRSFELLRGLYFMRTRGNNEQSCHIGSQFLHVMSERRRREKLNRNFEALKSLLPPETKALWLLKEWVY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4104g00004 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 303 IPR011598 GO:0046983
Pral4104g00004 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 292 IPR036638 GO:0046983
Pral4104g00004 303 Gene3D - 259 295 IPR036638 GO:0046983
Pral4104g00004 303 Pfam Helix-loop-helix DNA-binding domain 266 291 IPR011598 GO:0046983
Pral4104g00004 303 Coils Coil 267 287 - -
Pral4104g00004 303 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 78 293 IPR044658 -
Pral4104g00004 303 CDD bHLH_AtbHLH_like 266 293 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4104g00004 Pral-Chr4104 54815 57038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4104g00004 210 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 35.849 1.86e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4104g00004 HLH 2.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4104g00004 - - pcin:129308826 234.958