Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4098g00041 | ATGACGGACCAGACCGAGTTCAGCGTTCTCTGCAGCCTCTTTACATGGACTCAGAGAAGCAAGTCGTCCGCTAAGAAGCGCTCCAAGTTCCGCAAATTTCTTGATACCTTCTGCACTGACAGAAATTATTTCGGTGCTATTCGGTTGATTCTTCCCAACCTCGACCGAGAGCGAGGCTCCTATGGCCTCAAGGAGTCGGTTCTCGCTACCTCCCTCATTGACGCTCTTGGGATGTCCAGGGAGTCCGAGGACGCTTTACGCCTCATCAATTGGCGCAAAGGCGGTGCAAAGACTGGTGCCAATGCCGGAAATTTCGCTCTTGTCGCTGCTGAGGTGCTGCAGCGTAGGCAAGGTTTGGCATCTGGTAGATTGACAATAAGGGAGTTAAACGAGCTGCTTGATAAACTAGCTTCAAGTGAAAGCAGGGCTGAGAAGACTTCAGTTCTTTCTACACTTATTCAAAAGACAAATGCACAGGAAATGAAGTGGATTGTCATGATAATACTCAAAGATCTAAAGCTTGGAATTAGTGAAAAGAGCATTTTCCATGAATTCCATCCGGATGCTGAAGACTTGTTTAATGTAACTTGTGACTTGAAATTAGTTTGTGAAAAGCTAAAGGATCGGAATCAACGTCATAAGAGACAAGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAACTAGCAAAGAGAGTTGCTAGTGCAACAGAAGCGTGGAAAAAGCTTCATGGGAAGGAAGTTGTTGTCGAGTGCAAGTTTGATGGTGATCGAATCCAAATTCATAAAAATGGGACAAATATACATTTCTTCTCAAGGAACTTTCTTGACCATTCAGAATATCAACATGGGATGTCAGACATTATATTACAAAATATTCTTGTCGACAGGTGTATTCTTGATGGTGAAATGTTGGTTTGGGATAAATCCTTGAACCGTTTTGCTGAATTTGGTTCTAATCAGGAAATCGCAAAGGCGGCAAGGGATGGGCTTGATAGTGATAGACAGTTATGTTACGTTGCGTTTGATATCCTTTATGTTGGAGATACAAGTGTAATACACCAGACTTTGAAGGAAAGACACGAGCTTCTCTGTAAAGTTGTGAAGCCCTTGAAGGGTAGTTTGGAAATTTTAATACCTAATGGTGGCCTCAACTCTAATTGTCCATCTGGGGAACCTTGTTGGTCATTTATTGCTCGTAATGTGGATGAAGTTGAGAGATTTTTCAAAGAAACTATTGAGAATAGAGATGAGGGAATTGTTCTGAAAGACCTTGGTTCCAAATGGGAACCCAGCGACCGTAGTGGAAAGTGGATGAAATTGAAGCCAGAGTATATACGTGCTGGGTCTGATCTGGATGCACTTATCATAGGTGGCTATTACGGCTCTGGACGAAGAGGAGGGGAGGTTGCTCAATTCTTGGTGGGACTAGCAGAGCGTCCCTCCCCTGGTGCGCACCCCAAGCGATTTATCTCATTTTGTAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCCCTAGTAACCAAACTGAAACCATATTTCAGGAAGTATGAATACCCAAGGAAGAGGCCACCAAGTTTTTATCAAGTCACTAACCATTCAAAAGAACGGCCTGATGTGTGGATCGAGAGCCCTGACAAATCAATAATTCTCTCTATAACTAGTGACATTCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGACAAACCCTGGTATGAATGTCTTGATGTGCAATCATTTATAGAATTAGTGCATTCCGGCAATGGCACAACAAAGGCGAGCACAGAGTATGGCAGCATGCAATACAGTAAATCAAAACGCGTGAAATCCTCTAAAGGGGAAGGGACGAAAAACATGTCTGTTGTCCCTTCTCATTTAATTCAGACTGATGTTTCCAATGTTAAGGGGGGCTCATTAATATTGTCGAATATGATGTTTTATTTTGTCAACGTGCCTCCATCTCATTCTCTTGATTCCTTGCATAAGATGATTGCTGAGAATGGGGGCACTTTCTCGATGAACTTGAACAATTCAGTCACCCATTGTGTTGCAGCAGATAGCAAGGGTTTTAAATTTGAAGCTGCAAAACGTCATGGTGATGTCATTCATTATAGTTGGGTGTTAGATTGCTGCTCGCAAAAGAAGCTTGTTCCCTTGCAGCCAAAGTACTTCCTTTTCCTTTCTGAACTCACAAAGAAGAAGTTACATGAAGAAATTGATGAGTTCTCAGACTCATACTACTTGAATCTTGACCGTGCGGACATCAAGCAGCTCTTGAGCAATATTCCCAGATCAAAGAAAGACATTAGCACTATCGACTATTACAGGAAAAAGTACTGCCCGAAGGATAAGTGGTTTCACTTTCAAGGATGCTCCATTTATTTCCCCACTTTTTTCCCACCTTCGAAAGGAGATTGGGAAGTTCTGTTGGGGCTTTCTCTGAGGAGATTGCGGTCTGAAGTTCTCATGAGCGGCGGCAAAGTCACTGATAATCCCACTTCTGCTACCCACCTTGTGGCCTTGTCAGTTCCAGGATATAATGTTGACTTTAAAGGAATGTTGACAAGTTTCACTCCATTTGAAGGAAAATTTCTTTCAAGCAAGAGGTTGCATGTTGTTGGATCCCGGTGGCTTGAAGATTGTTTGGAACAAGGCCAAAGATTACCAGAACAAACATATACATTAAAGCCCAGCGGAATAGAAGAACTAACTACTGAAGAGTGCAAACATGACTTGGCTTTAGATGGTTATTGTGGTGGAGATAATGTAGAGGACCGAAATTCGACACTTGTCTCTTTAAAGGGAAGTCATCAGCTGAGAAGTGCAAAACCTATGGAGGAAAGTTTGGTATCCCTGGAGAAGAGTGGCAAGAGGAAACGAGGAAGACCTGTAGGCAGAGGTGGCAGTAAAATGGTTAAAACAGCCGGCAACCAAACTCATCGATCACGAGCACGTATTGGAAAAAGACCTGCAAAAATATGTGACTACGAAACAGATGAAAGTGGTTCTCATGATGAAAAACCATATGAAGGTGAGATTGTCTCGAGAGGATTCAGTCTTGACTCTCATAATGGCGCAGAAGTCACTGAGACTGTGACATCACAAAATCCTCAGCCATCAAAACTAGACGATGCAGTTAAGCAAGAGGATTTGAAGGACGTTGAACATGAAGAACATTCTGTCCCCGAAATTGAAATGACTGAGCAACATAATGGCCAAAACAGTAGGGCTGAACAGGTTATGGCTGATCCAATACAGGCGATGCTTTTTGACATGTTTCCTAGCCTTGCGACAGAGGAAATTGATGAAACAAAGAATGATAACGTTAAAGATGATAAGCCCCAGGAAGTTGTTGAAACAAAGAATGATAATGTCAAAGATGATAAGCCACCTGAACAATCCAAAGCTGAGCCTACAAGGAAAAGAAAGTCAGCTATAAGGATGTTGCTAATGAGCTGCTTAAGGATTGGTAGAGCATCGTCTCGTTGGAATGCTAGTTGTTACTAG | 3552 | 0.4257 | MTDQTEFSVLCSLFTWTQRSKSSAKKRSKFRKFLDTFCTDRNYFGAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRESEDALRLINWRKGGAKTGANAGNFALVAAEVLQRRQGLASGRLTIRELNELLDKLASSESRAEKTSVLSTLIQKTNAQEMKWIVMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAKRVASATEAWKKLHGKEVVVECKFDGDRIQIHKNGTNIHFFSRNFLDHSEYQHGMSDIILQNILVDRCILDGEMLVWDKSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQTLKERHELLCKVVKPLKGSLEILIPNGGLNSNCPSGEPCWSFIARNVDEVERFFKETIENRDEGIVLKDLGSKWEPSDRSGKWMKLKPEYIRAGSDLDALIIGGYYGSGRRGGEVAQFLVGLAERPSPGAHPKRFISFCRVGTGLSDDELDALVTKLKPYFRKYEYPRKRPPSFYQVTNHSKERPDVWIESPDKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKPWYECLDVQSFIELVHSGNGTTKASTEYGSMQYSKSKRVKSSKGEGTKNMSVVPSHLIQTDVSNVKGGSLILSNMMFYFVNVPPSHSLDSLHKMIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDVIHYSWVLDCCSQKKLVPLQPKYFLFLSELTKKKLHEEIDEFSDSYYLNLDRADIKQLLSNIPRSKKDISTIDYYRKKYCPKDKWFHFQGCSIYFPTFFPPSKGDWEVLLGLSLRRLRSEVLMSGGKVTDNPTSATHLVALSVPGYNVDFKGMLTSFTPFEGKFLSSKRLHVVGSRWLEDCLEQGQRLPEQTYTLKPSGIEELTTEECKHDLALDGYCGGDNVEDRNSTLVSLKGSHQLRSAKPMEESLVSLEKSGKRKRGRPVGRGGSKMVKTAGNQTHRSRARIGKRPAKICDYETDESGSHDEKPYEGEIVSRGFSLDSHNGAEVTETVTSQNPQPSKLDDAVKQEDLKDVEHEEHSVPEIEMTEQHNGQNSRAEQVMADPIQAMLFDMFPSLATEEIDETKNDNVKDDKPQEVVETKNDNVKDDKPPEQSKAEPTRKRKSAIRMLLMSCLRIGRASSRWNASCY | 1183 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4098g00041 | 1183 | SUPERFAMILY | BRCT domain | 655 | 740 | IPR036420 | - | |
| Pral4098g00041 | 1183 | MobiDBLite | consensus disorder prediction | 1065 | 1080 | - | - | |
| Pral4098g00041 | 1183 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 250 | 258 | IPR016059 | GO:0003909 | |
| Pral4098g00041 | 1183 | Pfam | ATP dependent DNA ligase C terminal region | 465 | 584 | IPR012309 | GO:0003910|GO:0006281|GO:0006310 | |
| Pral4098g00041 | 1183 | CDD | Adenylation_DNA_ligase_IV | 214 | 445 | IPR044125 | GO:0005524 | |
| Pral4098g00041 | 1183 | Pfam | BRCT domain, a BRCA1 C-terminus domain | 654 | 736 | IPR001357 | - | |
| Pral4098g00041 | 1183 | CDD | BRCT_DNA_ligase_IV_rpt1 | 655 | 741 | - | - | |
| Pral4098g00041 | 1183 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 185 | 442 | - | - | |
| Pral4098g00041 | 1183 | Gene3D | DNA ligase/mRNA capping enzyme | 220 | 443 | - | - | |
| Pral4098g00041 | 1183 | CDD | OBF_DNA_ligase_IV | 448 | 592 | - | - |
Showing 1 to 10 of 36 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4098g00041 | K10777 | - | gmx:100816002 | 1691.01 |
Showing 1 to 1 of 1 entries