Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4098g00040 ATGACGGACCAGACCGAGTTCAGCGTTCTCTGCAGCCTCTTTACATGGACTCAGAGAAGCAAGTCGTCCGCTAAGAAGCGCTCCAAGTTCCGCAAATTTCTTGATACCTTCTGCACTGACAGAAATTATTTCGGTGCTATTCGGTTGATTCTTCCCAACCTCGACCGAGAGCGAGGCTCCTATGGCCTCAAGGAGTCGGTTCTCGCTACCTCCCTCATTGACGCTCTTGGGATGTCCAGGGAGTCCGAGGACGCTTTACGCCTCATCAATTGGCGCAAAGGCGGTGCAAAGACTGGTGCCAATGCCGGAAATTTCGCTCTTGTCGCTGCTGAGGTGCTGCAGCGTAGGCAAGGTTTGGCATCTGGTAGATTGACAATAAGGGAGTTAAACGAGCTGCTTGATAAACTAGCTTCAAGTGAAAGCAGGGCTGAGAAGACTTCAGTTCTTTCTACACTTATTCAAAAGACAAATGCACAGGAAATGAAGTGGATTGTCATGATAATACTCAAAGATCTAAAGCTTGGAATTAGTGAAAAGAGCATTTTCCATGAATTCCATCCGGATGCTGAAGACTTGTTTAATGTAACTTGTGACTTGAAATTAGTTTGTGAAAAGCTAAAGGATCGGAATCAACGTCATAAGAGACAAGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAACTAGCAAAGAGAGTTGCTAGTGCAACAGAAGCGTGGAAAAAGCTTCATGGGAAGGAAGTTGTTGTCGAGTGCAAGTTTGATGGTGATCGAATCCAAATTCATAAAAATGGGACAAATATACATTTCTTCTCAAGGAACTTTCTTGACCATTCAGAATATCAACATGGGATGTCAGACATTATATTACAAAATATTCTTGTCGACAGGTGTATTCTTGATGGTGAAATGTTGGTTTGGGATAAATCCTTGAACCGTTTTGCTGAATTTGGTTCTAATCAGGAAATCGCAAAGGCGGCAAGGGATGGGCTTGATAGTGATAGACAGTTATGTTACGTTGCGTTTGATATCCTTTATGTTGGAGATACAAGTGTAATACACCAGACTTTGAAGGAAAGACACGAGCTTCTCTGTAAAGTTGTGAAGCCCTTGAAGGGTAGTTTGGAAATTTTAATACCTAATGGTGGCCTCAACTCTAATTGTCCATCTGGGGAACCTTGTTGGTCATTTATTGCTCGTAATGTGGATGAAGTTGAGAGATTTTTCAAAGAAACTATTGAGAATAGAGATGAGGGAATTGTTCTGAAAGACCTTGGTTCCAAATGGGAACCCAGCGACCGTAGTGGAAAGTGGATGAAATTGAAGCCAGAGTATATACGTGCTGGGTCTGATCTGGATGCACTTATCATAGGTGGCTATTACGGCTCTGGACGAAGAGGAGGGGAGGTTGCTCAATTCTTGGTGGGACTAGCAGAGCGTCCCTCCCCTGGTGCGCACCCCAAGCGATTTATCTCATTTTGTAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCCCTAGTAACCAAACTGAAACCATATTTCAGGAAGTATGAATACCCAAGGAAGAGGCCACCAAGTTTTTATCAAGTCACTAACCATTCAAAAGAACGGCCTGATGTGTGGATCGAGAGCCCTGACAAATCAATAATTCTCTCTATAACTAGTGACATTCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGACAAACCCTGGTATGAATGTCTTGATGTGCAATCATTTATAGAATTAGTGCATTCCGGCAATGGCACAACAAAGGCGAGCACAGAGTATGGCAGCATGCAATACAGTAAATCAAAACGCGTGAAATCCTCTAAAGGGGAAGGGACGAAAAACATGTCTGTTGTCCCTTCTCATTTAATTCAGACTGATGTTTCCAATGTTAAGGGGGGCTCATTAATATTGTCGAATATGATGTTTTATTTTGTCAACGTGCCTCCATCTCATTCTCTTGATTCCTTGCATAAGATGATTGCTGAGAATGGGGGCACTTTCTCGATGAACTTGAACAATTCAGTCACCCATTGTGTTGCAGCAGATAGCAAGGGTTTTAAATTTGAAGCTGCAAAACGTCATGGTGATGTCATTCATTATAGTTGGGTGTTAGATTGCTGCTCGCAAAAGAAGCTTGTTCCCTTGCAGCCAAAGTACTTCCTTTTCCTTTCTGAACTCACAAAGAAGAAGTTACATGAAGAAATTGATGAGTTCTCAGACTCATACTACTTGAATCTTGACCGTGCGGACATCAAGCAGCTCTTGAGCAATATTCCCAGATCAAAGAAAGACATTAGCACTATCGACTATTACAGGAAAAAGTACTGCCCGAAGGATAAGTGGTTTCACTTTCAAGGATGCTCCATTTATTTCCCCACTTTTTTCCCACCTTCGAAAGGAGATTGGGAAGTTCTGTTGGGGCTTTCTCTGAGGAGATTGCGGTCTGAAGTTCTCATGAGCGGCGGCAAAGTCACTGATAATCCCACTTCTGCTACCCACCTTGTGGCCTTGTCAGTTCCAGGATATAATGTTGACTTTAAAGGAATGTTGACAAGTTTCACTCCATTTGAAGGAAAATTTCTTTCAAGCAAGAGGTTGCATGTTGTTGGATCCCGGTGGCTTGAAGATTGTTTGGAACAAGGCCAAAGATTACCAGAACAAACATATACATTAAAGCCCAGCGGAATAGAAGAACTAACTACTGAAGAGTGCAAACATGACTTGGCTTTAGATGGTTATTGTGGTGGAGATAATGTAGAGGACCGAAATTCGACACTTGTCTCTTTAAAGGGAAGTCATCAGCTGAGAAGTGCAAAACCTATGGAGGAAAGTTTGGTATCCCTGGAGAAGAGTGGCAAGAGGAAACGAGGAAGACCTGTAGGCAGAGGTGGCAGTAAAATGGTTAAAACAGCCGGCAACCAAACTCATCGATCACGAGCACGTATTGGAAAAAGACCTGCAAAAATATGTGACTACGAAACAGATGAAAGTGGTTCTCATGATGAAAAACCATATGAAGGTGAGATTGTCTCGAGAGGATTCAGTCTTGACTCTCATAATGGCGCAGAAGTCACTGAGACTGTGACATCACAAAATCCTCAGCCATCAAAACTAGACGATGCAGTTAAGCAAGAGGATTTGAAGGACGTTGAACATGAAGAACATTCTGTCCCCGAAATTGAAATGACTGAGCAACATAATGGCCAAAACAGTAGGGCTGAACAGGTTATGGCTGATCCAATACAGGCGATGCTTTTTGACATGTTTCCTAGCCTTGCGACAGAGGAAATTGATGAAACAAAGAATGATAACGTTAAAGATGATAAGCCCCAGGAAGTTGTTGAAACAAAGAATGATAATGTCAAAGATGATAAGCCACCTGAACAATCCAAAGCTGAGCCTACAAGGAAAAGAAAGTCAGCTATAAGGATGTTGCTAATGAGCTGCTTAAGGATTGGTAGAGCATCGTCTCGTTGGAATGCTAGTTTGAGAGGATGA 3555 0.4259 MTDQTEFSVLCSLFTWTQRSKSSAKKRSKFRKFLDTFCTDRNYFGAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRESEDALRLINWRKGGAKTGANAGNFALVAAEVLQRRQGLASGRLTIRELNELLDKLASSESRAEKTSVLSTLIQKTNAQEMKWIVMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAKRVASATEAWKKLHGKEVVVECKFDGDRIQIHKNGTNIHFFSRNFLDHSEYQHGMSDIILQNILVDRCILDGEMLVWDKSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQTLKERHELLCKVVKPLKGSLEILIPNGGLNSNCPSGEPCWSFIARNVDEVERFFKETIENRDEGIVLKDLGSKWEPSDRSGKWMKLKPEYIRAGSDLDALIIGGYYGSGRRGGEVAQFLVGLAERPSPGAHPKRFISFCRVGTGLSDDELDALVTKLKPYFRKYEYPRKRPPSFYQVTNHSKERPDVWIESPDKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKPWYECLDVQSFIELVHSGNGTTKASTEYGSMQYSKSKRVKSSKGEGTKNMSVVPSHLIQTDVSNVKGGSLILSNMMFYFVNVPPSHSLDSLHKMIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDVIHYSWVLDCCSQKKLVPLQPKYFLFLSELTKKKLHEEIDEFSDSYYLNLDRADIKQLLSNIPRSKKDISTIDYYRKKYCPKDKWFHFQGCSIYFPTFFPPSKGDWEVLLGLSLRRLRSEVLMSGGKVTDNPTSATHLVALSVPGYNVDFKGMLTSFTPFEGKFLSSKRLHVVGSRWLEDCLEQGQRLPEQTYTLKPSGIEELTTEECKHDLALDGYCGGDNVEDRNSTLVSLKGSHQLRSAKPMEESLVSLEKSGKRKRGRPVGRGGSKMVKTAGNQTHRSRARIGKRPAKICDYETDESGSHDEKPYEGEIVSRGFSLDSHNGAEVTETVTSQNPQPSKLDDAVKQEDLKDVEHEEHSVPEIEMTEQHNGQNSRAEQVMADPIQAMLFDMFPSLATEEIDETKNDNVKDDKPQEVVETKNDNVKDDKPPEQSKAEPTRKRKSAIRMLLMSCLRIGRASSRWNASLRG 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4098g00040 1184 Gene3D BRCT domain 799 910 IPR036420 -
Pral4098g00040 1184 FunFam DNA ligase 1 218 - -
Pral4098g00040 1184 SUPERFAMILY BRCT domain 655 740 IPR036420 -
Pral4098g00040 1184 MobiDBLite consensus disorder prediction 1065 1080 - -
Pral4098g00040 1184 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Pral4098g00040 1184 CDD Adenylation_DNA_ligase_IV 214 445 IPR044125 GO:0005524
Pral4098g00040 1184 Pfam BRCT domain, a BRCA1 C-terminus domain 654 736 IPR001357 -
Pral4098g00040 1184 CDD BRCT_DNA_ligase_IV_rpt1 655 741 - -
Pral4098g00040 1184 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Pral4098g00040 1184 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Pral4098g00040 1184 CDD OBF_DNA_ligase_IV 448 592 - -
Pral4098g00040 1184 MobiDBLite consensus disorder prediction 1003 1024 - -
Pral4098g00040 1184 ProSiteProfiles BRCT domain profile. 651 739 IPR001357 -
Pral4098g00040 1184 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pral4098g00040 1184 MobiDBLite consensus disorder prediction 951 1024 - -
Pral4098g00040 1184 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pral4098g00040 1184 NCBIfam ATP-dependent DNA ligase 61 598 IPR000977 GO:0003910|GO:0005524|GO:0071897
Pral4098g00040 1184 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Pral4098g00040 1184 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pral4098g00040 1184 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 208 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pral4098g00040 1184 SUPERFAMILY BRCT domain 799 912 IPR036420 -
Pral4098g00040 1184 PANTHER DNA LIGASE 4 3 1130 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Pral4098g00040 1184 MobiDBLite consensus disorder prediction 1065 1092 - -
Pral4098g00040 1184 FunFam DNA ligase 666 780 - -
Pral4098g00040 1184 FunFam DNA ligase 220 443 - -
Pral4098g00040 1184 SMART BRCT_7 653 729 IPR001357 -
Pral4098g00040 1184 SMART BRCT_7 814 900 IPR001357 -
Pral4098g00040 1184 Gene3D - 445 604 IPR012340 -
Pral4098g00040 1184 MobiDBLite consensus disorder prediction 1116 1159 - -
Pral4098g00040 1184 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pral4098g00040 1184 Gene3D BRCT domain 666 778 IPR036420 -
Pral4098g00040 1184 Coils Coil 126 146 - -
Pral4098g00040 1184 FunFam DNA ligase 444 605 - -
Pral4098g00040 1184 ProSiteProfiles BRCT domain profile. 803 910 IPR001357 -
Pral4098g00040 1184 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Pral4098g00040 1184 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4098g00040 Pral-Chr4098 360180 373586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4098g00040 214 601 Core DNA Replication Machinery Family AT1G08130 27.047 2.10e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4098g00040 K10777 - gmx:100816002 1691.01