Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4098g00037 ATGGAGAATATCGGCGAAGAGTATAGGCATTACTGGGAAACCAACAGGTTCCTTCAAACCGAGGAGCTCGACAGTTGGGGATGGGATGAGGCCTTCTCCGGTTACTATGATTCCAGCTCCCCCGACGGCGGTGCCTCCTCCGCCGCATCCAAGAACATTGTGTCCGAGCGGAACCGCCGCAAGAAGCTCAACGAGAGGCTCTTCGCTCTCAGAGCCGTCGTCCCAAACATCAGCAAGATGGACAAGGCTTCCATAATTAAGGACGCAATCGATTACATCCAGCGCTTGCACGAACAAGAGAGGAGTATTGAGTCGGAGATATCAGAGCTTGAATCTGGGAAGCAGATGAAGCAGAACTCGAGCGATATCGATTACGAGCAAGACCTCCCTGTCCTGCTCAGGTCCAAGAAGAAGAAAACAGAGCAGCAGCTTTACGATTCTGTTATCAGTTCAAGGAATTGCCCGATCGAAGTACTTGAGCTAAAGGTAACGTACATGGGAGAGAAGACGATTGTGGTGAGTTTGACGTGTAGCAAGAGGACAAACACAATGGTGAAACTGTGCGAAGTGTTCGAATCGCTGAAGCTGAAGATTGTTACGGCCAACATAACTTGTTTCTCGGGCAGGCTTGTGAAGACAGTCTTTGTCGAGGCAGACGAAGAAGAGAAAGATCTCTTGGAGATAAAAATCCAAACGGCCATTGCAGCTCTTAATGATCCCGATAGCCCTATGAGCATCTAA 741 0.4926 MENIGEEYRHYWETNRFLQTEELDSWGWDEAFSGYYDSSSPDGGASSAASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIDYIQRLHEQERSIESEISELESGKQMKQNSSDIDYEQDLPVLLRSKKKKTEQQLYDSVISSRNCPIEVLELKVTYMGEKTIVVSLTCSKRTNTMVKLCEVFESLKLKIVTANITCFSGRLVKTVFVEADEEEKDLLEIKIQTAIAALNDPDSPMSI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4098g00037 246 SMART finulus 53 102 IPR011598 GO:0046983
Pral4098g00037 246 Coils Coil 93 113 - -
Pral4098g00037 246 Pfam Helix-loop-helix DNA-binding domain 54 96 IPR011598 GO:0046983
Pral4098g00037 246 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 231 - -
Pral4098g00037 246 Coils Coil 216 236 - -
Pral4098g00037 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 112 IPR036638 GO:0046983
Pral4098g00037 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Pral4098g00037 246 Gene3D - 45 113 IPR036638 GO:0046983
Pral4098g00037 246 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4098g00037 Pral-Chr4098 351196 355901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4098g00037 1 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 63.182 5.55e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4098g00037 HLH 3.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4098g00037 - - pcin:129308076 375.941