Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4095g00001 ATGTGGAATCCTCTGTCATGGGTTATGGAAGCTGCTGCAATTATGGCGATTGCCCTGGCAAATGGTGACGGAAGGCCCCCAGATTGGGAGGACTTTGTGGGTATTGTATGTTTGTTGCTGATCAACTCCACTATCAGTTTCATTGAAGAAAACAATGCTGGGAATGCTGCTGCAGCTCTTATGGCTAGCCTTGCTCCTAAGACAAAGGTTCTTAGAGATGGGAAATGGACTGAGGAAGAAGCTTCAATTCTGGTTCCTGGAGACATCATAAGTGTTAAACTTGGTGACATTATTCCTGCTGATGCTCGCCTTCTTGAGGGTGACCCGTTGAAGATTGATCAATCTGCTCTGACAGGAGAGTCTCTTCCTGTGACCAAGAACCCTGGAGATGAAGTCTTCTCTGGATCAACTTGCAAACAAGGTGAAATTGAAGCTGTCGTTATTGCTACTGGTGTCCACACATTCTTTGGGAAGGCGGCTCATCTTGTGGACAGCACCAACCAAGTTGGGCATTTCCAGAAGGTTCTCACAGCAATAGGGAACTTCTGCATTTGCTCCATTGCTGTTGGAATGTTGACTGAGATCATAGTCATGTATCCTATCCAACACAGAAAGTACAGAGATGGAGTTGAAAACCTCTTGGTCCTCCTGATTGGAGGAATCCCAATTGCTATGCCTACTGTGTTGTCTGTGACCATGGCCATTGGTTCTCATAAGCTCTCTCAGCAAGGTGCCATCACCAAGCGTATGACTGCCATTGAAGAGATGGCTGGTATGGATGTTCTTTGCAGTGACAAGACCGGGACACTCACCCTTAACAAACTTAGTGTTGATAAGAACTTAATTGAGGTCTTTGTAAAGGGTGTGGACAAGGAACATGTGATGCTTCTTGCTGCAAGGGCCTCTAGAATCGAAAACCAGGACGCCATTGATGCTGCCATTGTCGGAACGCTTGCTGACCCGAAAGAGGCAAGGGCTGGGATCAGAGAGGTGCATTTTTTCCCATTCAATCCTGTTGACAAGAGAACTGCTTTGACTTACATTGAAGCTGATGGAAGTTGGCACCGGGCAAGCAAAGGTGCACCAGAGCAGATCATGAACCTGTGCAACCTAAGGGAAGACGCTAAGAAGAAGGTCCATGCTATTATTGACAAGTTTGCAGAAAGAGGCCTTCGTTCACTTGCTGTTGCAAGACAGGAAGTTCCTGAGAGAACGAAAGAAAGCCCTGGTGCTCCATGGCAGTTTGTCGGGGTGTTGTCACTGTTTGACCCTCCTAGGCATGACAGTGCTGAAACCATTCGAAGAGCTCTTAACCTCGGAGTAAATGTCAAGATGATAACTGGTGATCAACTAGCCATAGCAAAAGAGACAGGAAGGAGACTTGGCATGGGAACAAACATGTACCCATCTGCTTCCTTGCTTGGTCAAGATAAAGATGCAAATATTGCATCACTTCCTGTGGAAGAGTTGATTGAGAAGGCAGATGGATTTGCTGGAGTATTTCCAGAGCACAAATATGAAATCGTGAGGAAATTGCAAGAGAGGAAGCACATTTGTGGAATGACTGGTGATGGTGTCAATGATGCTCCTGCTTTGAAGAAGGCAGATATCGGTATTGCAGTAGCTGATGCAACCGATGCTGCAAGAGGTGCTTCTGATATTGTCTTGACTGAACCTGGGTTGAGTGTCATCATTAGTGCAGTCTTGACTAGCAGAGCTATTTTTCAAAGAATGAAAAACTACACTATCTATGCAGTCTCCATCACTATACGTATAGTGTTTGGCTTCCTGTTCATTGCATTGATATGGAAATTTGACTTCTCTCCTTTCATGGTTTTGATTATTGCCATTCTAAATGACGGAACAATCATGACAATTTCAAAAGACAGAGTGAAGCCATCTCCCTTGCCTGACAGTTGGAAACTGAAAGAAATTTTTGCCACTGGGGTTGTGCTTGGAGGTTACCTGGCTCTGATGACTGTCATATTTTTCTGGGCAATGAAAGAAACTGACTTCTTCCACGACAAATTCAAAGTTAGACCTCTGAATGACAGTGAACATGAAATGATGTCTGCTTTGTACCTACAAGTCAGTATAGTGAGCCAGGCTCTTATATTTGTGACCCGTTCTCGTAGTTGGTCCTATGTTGAACGCCCTGGATTGCTTTTAATGAGTGCCTTCATTATTGCTCAGCTGATTGCTACTTTCATAGCAGTATATGCCAACTGGGGATTTGCAAGGATCAAAGGAATTGGGTGGGGTTGGGCGGGAGTGGTCTGGCTCTACAGTATTGTCTTCTATGTTCCACTTGACTTCTTAAAATTCGCTATCCGTTACATCCTAAGTGGCAAGGCATGGAACAACCTACTAGAAAACAAGACTGCCTTCACCACCAAGAAAGACTATGGAAAAGAGGAGAGAGAGGCTCAATGGGCACTTGCTCAGAGAACCCTCCATGGACTTCAACCTCCAGAAACTTCTAGCATCTTCAATGATAAGAACAACTACAGAGAGCTCTCTGAGATTGCTGAGCAGGCCAAGAGAAGAGCTGAAGTTGCAAGGCTTCGCGAGCTTCACACGCTCAAGGGTCATGTTGAATCAGTGGTGAAGCTGAAAGGGCTGGACATTGACACAATCCAGCAGCACTACACTGTGTAA 2658 0.4522 MWNPLSWVMEAAAIMAIALANGDGRPPDWEDFVGIVCLLLINSTISFIEENNAGNAAAALMASLAPKTKVLRDGKWTEEEASILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLTEIIVMYPIQHRKYRDGVENLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKEHVMLLAARASRIENQDAIDAAIVGTLADPKEARAGIREVHFFPFNPVDKRTALTYIEADGSWHRASKGAPEQIMNLCNLREDAKKKVHAIIDKFAERGLRSLAVARQEVPERTKESPGAPWQFVGVLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDANIASLPVEELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWAMKETDFFHDKFKVRPLNDSEHEMMSALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMSAFIIAQLIATFIAVYANWGFARIKGIGWGWAGVVWLYSIVFYVPLDFLKFAIRYILSGKAWNNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSSIFNDKNNYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4095g00001 885 Coils Coil 836 856 - -
Pral4095g00001 885 Gene3D - 66 150 - -
Pral4095g00001 885 Gene3D - 260 559 IPR023214 -
Pral4095g00001 885 PRINTS H+-transporting ATPase (proton pump) signature 494 510 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4095g00001 885 PRINTS H+-transporting ATPase (proton pump) signature 694 715 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4095g00001 885 PRINTS H+-transporting ATPase (proton pump) signature 379 397 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4095g00001 885 PRINTS H+-transporting ATPase (proton pump) signature 553 578 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4095g00001 885 PRINTS H+-transporting ATPase (proton pump) signature 522 538 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4095g00001 885 SUPERFAMILY Calcium ATPase, transduction domain A 66 163 IPR008250 -
Pral4095g00001 885 Gene3D - 28 749 - -
Pral4095g00001 885 PRINTS P-type cation-transporting ATPase superfamily signature 545 557 - -
Pral4095g00001 885 PRINTS P-type cation-transporting ATPase superfamily signature 113 127 - -
Pral4095g00001 885 PRINTS P-type cation-transporting ATPase superfamily signature 439 449 - -
Pral4095g00001 885 PRINTS P-type cation-transporting ATPase superfamily signature 263 277 - -
Pral4095g00001 885 PRINTS P-type cation-transporting ATPase superfamily signature 522 541 - -
Pral4095g00001 885 PRINTS P-type cation-transporting ATPase superfamily signature 417 428 - -
Pral4095g00001 885 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 781 IPR023298 -
Pral4095g00001 885 NCBIfam HAD-IC family P-type ATPase 497 611 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4095g00001 885 NCBIfam HAD-IC family P-type ATPase 35 282 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4095g00001 885 FunFam Plasma membrane ATPase 66 150 - -
Pral4095g00001 885 Pfam E1-E2 ATPase 64 242 - -
Pral4095g00001 885 Gene3D - 834 885 - -
Pral4095g00001 885 ProSitePatterns E1-E2 ATPases phosphorylation site. 265 271 IPR018303 -
Pral4095g00001 885 CDD P-type_ATPase_H 1 775 IPR006534 GO:0008553|GO:0016020|GO:0120029
Pral4095g00001 885 SUPERFAMILY HAD-like 259 569 IPR036412 -
Pral4095g00001 885 NCBIfam plasma-membrane proton-efflux P-type ATPase 1 740 IPR006534 GO:0008553|GO:0016020|GO:0120029
Pral4095g00001 885 FunFam ATPase 4 plasma membrane-type 508 749 - -
Pral4095g00001 885 SFLD p-type atpase 245 573 IPR044492 -
Pral4095g00001 885 FunFam Plasma membrane ATPase 414 570 - -
Pral4095g00001 885 Gene3D - 275 422 IPR023299 GO:0000166
Pral4095g00001 885 FunFam Plasma membrane ATPase 275 422 - -
Pral4095g00001 885 SFLD C1.7: P-type atpase like 245 573 - -
Pral4095g00001 885 PANTHER CALCIUM-TRANSPORTING ATPASE 1 817 - -
Pral4095g00001 885 Pfam haloacid dehalogenase-like hydrolase 259 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4095g00001 Pral-Chr4095 8 6277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4095g00001 1 885 Primary Pumps ATPases AT2G18960 85.989 0.0 1543