Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4093g00072 ATGGGAAGACAGATAATACGTCAAACTTCACAAAATAAGCTTCCAAATCGGGGTCATAAATACGAGGTATTTTTGAGTTTTAGAAGTAAAGACACTCGGGCAACTTTTACTTCACATCTCTATTCGGCTCTATGTAATGCTGGTATTACTGTTTTCAAAGATGATGTTGAGCTTCCCAAAGGAAATCATATCAAAACGGAACTATTGCAAGCAATTGGAACTTCAAAAATTGCAATTATCATCTTCTCTAGGGAATACGCTGCATCTAAATGGTGTTTGGAGGAGTTGTCAATAATCATGGAGCTTCATAAATCAAATGATCAGGTGGTTCTACCCGTGTTTTATTACGTGTATCCAGCAGATATTCGTAATCAAACTTCTAATTTTGGAGTAGCATTTGAAGATCTTATACAAAGAATTTCACCCCCTGATTATCAAGTTTCTAACTGGAAGACAGCCCTTGCTGAAGCTGGGGGCATTGCGGGCATCGTTGTACTTGGTTCCAGGGATGAGAGTGAAAATGTCAAAGCTGTTGTTGAGAATGTTTGTGATATATTGGGCAGGAAAGGCTTGTTTGTCGCTGAGTATCCAGTAGGAATGGATAATCGTGTGCAAGAATTGATCACAATGCTCCAAAATCATCAATCTGAAGATGTTGTCATTGTGGGGATATGGGGAATGGGTGGCGTAGGCAAGACAACTATTGCCAAAGCCATTTATAATGAAATTGGTCCCATGTTTGAGAGTAGAAGTTACCTTCCAAATATTAGAAAAGTTTGGAGCCAAGAAAAAGACCAAGTGAGCTTACAGAACCAACTTCTTTCTGAAATATGTAGGACAGCAAAAATGAAGATAAATAGCATTGAATCAGGAACAATCACATTGAGGGAGAGACTTTGCCATAAAAAGGCATTAGTTGTGCTTGATGATGTGGATGAGTCGGCCCAACTAAATGCTCTAGTTGGAAGTCGTGACTGGTTTAAATCAGGAAGTATAATAATCATCACAACTAGAAATCAACGTCTACTTCTTGAAATAAACTGTGGTGTTTATCTAATGAAGAATTTGGATGTAGGGGAATCTATTGAGCTTTTTAGTTGGCATGCATTTAAACAAGAATGTCCTAAAGAAGATTTTACTGAACTTTCAAGAGATATAGTTGCATATTGTGGGGGACTTCCATTAGCTCTTGAAGTCCTTGGCTCCTATTTATTTGGTAGAGAAGCCAAGGAATGGAAGAGTTTATTGGAGAAACTTAAAAAGATTCCCAACAGCAAGATACATAAGAAACTAAAGATAAGTTTTGATGGGTTAGATGATTTGGAGAAAGAAATATTCCTTGATATATCTAGCTTTTTTATTGGGATGGACAAAAATGAAGTAACGCAAATATTAAATGGTTGTGAATTCTTTGCTGATATTGGAATCAAAACCCTTTCAAAGCGATGCCTTGTAACCATGGATGAGAAGAACAAGCTCAGTATGCATGATTTGCTGTGGGACATGGGAAGAGAAATAATTCGTGAACAATCTCAAAAGGAGCTTGGAAAGAGAAGTAGGTTATGGTTTCATAAGGATGCCCTTGCCGTGTTATTAGAACACATGGGAACAGCGGCTATTGAAGGATTGTCTTTGAAGCTGTCACAGAGTGAAAAAATGAATTTTCAGACAGAAACATTTAAGAATATGAAGAGACTTCGATTACTTTGTCTTGACAATGTACAACTTAGAGGAGACTACAAATACATTTCTAGAGATCTCAAATGGCTTTGCTGGCATGGCTTTCCTGTAAAATACATTCCCAGCAACTTTTATCAACAGGGATTAGTTGCTATTGACTTGAAATACAGTAGCCTCAGACAATTGTGGAAGGAACCCCAGTTATTGAAGATGCTGAAAATCCTCAATCTCAGCCACTCTCATTACTTGGTGCAAACTCCTGATTTCTCAAAACTACCAAATCTTGAAAAGTTGATCCTCAAAGATTGTCCAAGTTTAGTCATGATACACCATTCTATTGGGCTTCTTCATAAACTTCTTTTACTAGACTTGGAGGATTGTATTGGCCTTCATACTCTCCCAAGAAGCATTTATAGATTAAAATGCTTAAAAACTCTCATTCTTTCTGGTTGTAAGAATATTGAAAAGCTAGAGGAGGACATAGAGCGAATGGAATCTTTGACAACTCTAATTGCTCCTGCAATTAAACAAGTGCCATTTTCTATAGCGAGATTGAGGAGCATCTTGTATCTATCTATTTGTGGTCATGAAGGATTATCACATCATGTGATTCCTTCTCTTTACCAGTCTTGGATGTCCCCGACAAACAGTCCACTACCTCTAATTCCAACACATGCGGGCATGCCATCATCGATTTTGTTGAATATGCTAAACGATATCCCTAATTCTTTAACAACCCCTAGCAGTGAACTAAAGCAACAAAGTCCTTTGTTGGAAGATGGATTAGAGATTCTTGATTCTTTGTGTGCCACAAATTGTATGGACAACTGGAGGCCTAAACATTGCTCTAGACATCTTTTAGTTCAAATTGGAAAGAATTGTCAAGTCTTTCATACACTTTCAGAGAGGGTTTCACAAGGATTAAATCTTACAGAGTATAATGACGATTGTGCTCTCCCCTGTGACAATTACCCCTATTGGCTAACATTCAAGGGTGAAGGAGATTCTACAATCACTTTGCGCTACACGCAAGAGTCACTCACTTCATTTGAAGAAGCAGACGGGAAGGAAATAATATCAAATCTTGAATCTAGTGATCAAGTGGAGGTGATAGTAGCTTTTGAGAGAGGATTCTTGGTGAAGAAAACAGTCATCTATTTGATATATAATGAATCATTTGATGAACAAATGGAGCCTTCATCATCTAAAGCTACCAATTTGACTAGAAAGGCAATGAAGATTTGA 2925 0.3757 MGRQIIRQTSQNKLPNRGHKYEVFLSFRSKDTRATFTSHLYSALCNAGITVFKDDVELPKGNHIKTELLQAIGTSKIAIIIFSREYAASKWCLEELSIIMELHKSNDQVVLPVFYYVYPADIRNQTSNFGVAFEDLIQRISPPDYQVSNWKTALAEAGGIAGIVVLGSRDESENVKAVVENVCDILGRKGLFVAEYPVGMDNRVQELITMLQNHQSEDVVIVGIWGMGGVGKTTIAKAIYNEIGPMFESRSYLPNIRKVWSQEKDQVSLQNQLLSEICRTAKMKINSIESGTITLRERLCHKKALVVLDDVDESAQLNALVGSRDWFKSGSIIIITTRNQRLLLEINCGVYLMKNLDVGESIELFSWHAFKQECPKEDFTELSRDIVAYCGGLPLALEVLGSYLFGREAKEWKSLLEKLKKIPNSKIHKKLKISFDGLDDLEKEIFLDISSFFIGMDKNEVTQILNGCEFFADIGIKTLSKRCLVTMDEKNKLSMHDLLWDMGREIIREQSQKELGKRSRLWFHKDALAVLLEHMGTAAIEGLSLKLSQSEKMNFQTETFKNMKRLRLLCLDNVQLRGDYKYISRDLKWLCWHGFPVKYIPSNFYQQGLVAIDLKYSSLRQLWKEPQLLKMLKILNLSHSHYLVQTPDFSKLPNLEKLILKDCPSLVMIHHSIGLLHKLLLLDLEDCIGLHTLPRSIYRLKCLKTLILSGCKNIEKLEEDIERMESLTTLIAPAIKQVPFSIARLRSILYLSICGHEGLSHHVIPSLYQSWMSPTNSPLPLIPTHAGMPSSILLNMLNDIPNSLTTPSSELKQQSPLLEDGLEILDSLCATNCMDNWRPKHCSRHLLVQIGKNCQVFHTLSERVSQGLNLTEYNDDCALPCDNYPYWLTFKGEGDSTITLRYTQESLTSFEEADGKEIISNLESSDQVEVIVAFERGFLVKKTVIYLIYNESFDEQMEPSSSKATNLTRKAMKI 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4093g00072 974 SMART till_3 20 160 IPR000157 GO:0007165
Pral4093g00072 974 Pfam TIR domain 20 182 IPR000157 GO:0007165
Pral4093g00072 974 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Pral4093g00072 974 PRINTS Disease resistance protein signature 698 714 - -
Pral4093g00072 974 PRINTS Disease resistance protein signature 390 404 - -
Pral4093g00072 974 PRINTS Disease resistance protein signature 221 236 - -
Pral4093g00072 974 PRINTS Disease resistance protein signature 298 312 - -
Pral4093g00072 974 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 162 IPR035897 -
Pral4093g00072 974 Gene3D Ribonuclease Inhibitor 539 734 IPR032675 -
Pral4093g00072 974 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 188 - -
Pral4093g00072 974 SUPERFAMILY L domain-like 545 766 - -
Pral4093g00072 974 Pfam NB-ARC domain 202 425 IPR002182 GO:0043531
Pral4093g00072 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 449 IPR027417 -
Pral4093g00072 974 Gene3D - 16 192 IPR035897 -
Pral4093g00072 974 Gene3D - 193 353 IPR027417 -
Pral4093g00072 974 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 759 IPR044974 GO:0006952
Pral4093g00072 974 Gene3D - 356 439 IPR042197 -
Pral4093g00072 974 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4093g00072 Pral-Chr4093 1528567 1535047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4093g00072 21 745 WRKY Transcription Factor Family AT4G12020 30.780 3.55e-81 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4093g00072 - - pcin:129287786 1161.36