Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4093g00063 ATGGCAATCATCATCTTTTCTAAGCACTATGCTAGTTCCAGAAGGTGCCTTGGGGAACTCACAAAAATTATGGAGTTTCACAGATCACGTGATCAGGTAGTTCTTCCCATATTTTATGGTGTGAATCCGTCGGAGGTTCATAATCAAGAATGTAGTTTTGGACAAGCATTTCAAGATCTTGTTCAAAGAATTTCACCCGATGAAAATGAAGTGTCGGGGTGGATGACAGCTCTCAGTGAAGCTGGAAGCGTTTGTGGGCTTGTTGTGCCTAATTTCGAGTCCAAGAATGAAAGTGAGGATATTCAGAATATTGTCAAGCTTGTTCGTTATCTATTGGATACGAAAGACTCGTGTGCCACAGAAGGCCTAGTTGGAGTTCGTTCTCAAGTGCAAGAAGTGATTACGATGCTTCATAAGCATCAATCAAAAGATGTTGTCTCCCTTGGGATATGGGGAACGGGGGGTATTGGCAAAACAACTACTGCCAAACTCATTTTTGACCGCATTCAGAATGAATTCGAAAGTACATGTTTTTTTTCAAATGTAAGGCAAGCTTGGGAGAGCAAAGGCAGAGTTTATTTGCAAGAACAACTTGTTTCAAGAATATGTGAAGCGAAAAATATGAGAATGGATAGCAATGAATCAGGAAGCCTCAAGTTGAAGGAAAGACTTCGCCACAGGAAAGTACTTGTTGTGCTTGATGATGTGAATGACTTGGAGCAACTACGTGCTTTATGTGGAAATCGTGAATGGTTAGGTGAAGGGAGTAAAATCATCATTACAACTAGGGATTTACATTTACTTAAGACCTTTGGAGTGGATGATATACATAGCATGAAGCTTTTAAGCAATGATGCGTCTCTTGAACTTTTCATTAGAAAAGCATTTAAACGAGCAAGCCCAGAAGGAAAATTCATGGAACTTTGCAGAAGAATGGTTGCTTATGCTGAGGGACTACCGCTAGCTCTTAACGTCCTTGGCTCTAGTTTATATGGGCAATCATCATGGGAATGGGACTGGGAGTTGATGAAACTAAGCATAATTCCACCTCCTGCTATATTCAAGAAATTGAAGCTTAGCTTTGACTCTTTAGATGGTAATGGAAAAGAAATATTTCTAAATATAGTTTTATTTCATATTGGGGAGGACAAGGATGATGTGATCCAAAAGTTGGATGGCCACGGATGTAATGCTAGCATTGGGATAGGAGCCCTGGTGGATCGGAGCCTTGTAACCATTGACAAGAACAACAAACTTAAAATGCATCATATGTCGCAGCTCATGGGAAGAAGAATAATACATCAAAGTTCACAAAACAATCTTCTAAAGCGAAGTTATAAGTATGATGTGTTTTTGAGTTTTAGAGGTGAAGACACTCGGGCAACTTTTACTTCGCATATAAATTCAGCTCTACGTGATGCTGGCATCTTTGTTTTCAAAGATGATGTTGAACTTCCTAGAGGAAATCATATCAAACTAGAATTATTGCAGGCAATTGGAAGCTCAAAAATTGCAATCATCATCTTCTCTAGGAAATACGCTGCATCTAAATGGTGTTTGGATGAACTGTCATTGATAAGGGAGCTTCATAAATCAGATTATCAGGTGATTCTACCCGTGTTTTATGACGTGGCTCCATCAGAAGTTCGTAGTCAAACTTCTAGTTTTGGAAAAGCATTTAAAAAACTTATACAAAAATTTTCACCACCAAAAGGTCAAGTTTCCAAGTGGAGGACAGCCCTTCGTGATGTTGGGGCCATTGCAGGGACCGTCATACTTAATTCCAGGGAGGAGAGTGGATACGTGAAAGCTATTGTTGATGATGTTCGTGATATATTGGACAAGAAAGACTTATATGTGGCTGAGCACCCAGTAGGAGTGGATAATCGCATGCAAGAAGTGATCACAATGCTCCAAAACCATCCATCTGAAGATGTTGTCATGGTAGGGATATGGGGAATGGGGGGCGTGGGCAAAACAACCATTGCCAAAGCCATTTATAATAAAATTGGTCATAAGTTTGAGGGTAGAAGTTACCTTCCAAGGATCAGAAAAGTTTGGAATCAAAGAGAGGGGAAAGTGCGCTTACAGAACCAACTTCTTTCTGATATATGTAAGCCTACAAAGATGAAGATAAATAGCATTGAATCAGGAATAAACATATTGAGGGATAGACTTCGTCATAAAAAGGCATTGGTTGTAGTTGATGGTGTGGATAAGTCAAGCCAACTACATGCTTTAGTTGGAAGTCGTGATTGGTTTGGTAAAGGGAGTATAGTAATCATCACAACTAGAGATCGACATCTACTCCGTGAAAGCAATTGTGTTGTTCATTTAGTAAAGAATTTGGATGAAAGAGAATCTATTGAGCTCTTTAGTTGGCATGCATTTAGACAAAAAAGCCCTAAAGAAGATTTCATTGAACTTTCAAGACGTGTAGTTGCGTACTCTGGAGGACTTCCATTGGCTCTTAAAGTATTTGGCTCCTATTTATTTGCTAGAGAAACAGAGGAATGGGAGAGTGTATTGGAGAGAATTAAAAAAATTCCCTTGAAAAAGATACAAAAGAAGCTAAAAACAAGCTTTGACAGTTTAAGTGATTTGTCGGATAAAGAAATATTTCTTGATATATCTTGCTTCTTTATTGGGATGGACAAAGATGATGTGACACAAATATTAAATGGTTGTAGATTTTTTGCCAAAACTGGAATAAAAAACCTTGAGGAGCGAAGCCTTGTGACTATTGATGAGAACAATAAGCTTGGTATGCATAATTTGCTTCGAGATATGGGACGAGAAATAATTCGTGAAGAGTCTCGAACTCTTGGGAAGAGAAGTAGGTTATGGTTTCACAAGGATGCACAAGCTGTATTATTAAAACGCAGGTCACATGTCTATAAGCTTGATGATCATGACAAGTATGTCGCTATTTCGCTTTTTGGCAAACAAATAACACAACTGCACACTTCGATTTCTGCAGGGAACAAACGCTATTGA 2997 0.3884 MAIIIFSKHYASSRRCLGELTKIMEFHRSRDQVVLPIFYGVNPSEVHNQECSFGQAFQDLVQRISPDENEVSGWMTALSEAGSVCGLVVPNFESKNESEDIQNIVKLVRYLLDTKDSCATEGLVGVRSQVQEVITMLHKHQSKDVVSLGIWGTGGIGKTTTAKLIFDRIQNEFESTCFFSNVRQAWESKGRVYLQEQLVSRICEAKNMRMDSNESGSLKLKERLRHRKVLVVLDDVNDLEQLRALCGNREWLGEGSKIIITTRDLHLLKTFGVDDIHSMKLLSNDASLELFIRKAFKRASPEGKFMELCRRMVAYAEGLPLALNVLGSSLYGQSSWEWDWELMKLSIIPPPAIFKKLKLSFDSLDGNGKEIFLNIVLFHIGEDKDDVIQKLDGHGCNASIGIGALVDRSLVTIDKNNKLKMHHMSQLMGRRIIHQSSQNNLLKRSYKYDVFLSFRGEDTRATFTSHINSALRDAGIFVFKDDVELPRGNHIKLELLQAIGSSKIAIIIFSRKYAASKWCLDELSLIRELHKSDYQVILPVFYDVAPSEVRSQTSSFGKAFKKLIQKFSPPKGQVSKWRTALRDVGAIAGTVILNSREESGYVKAIVDDVRDILDKKDLYVAEHPVGVDNRMQEVITMLQNHPSEDVVMVGIWGMGGVGKTTIAKAIYNKIGHKFEGRSYLPRIRKVWNQREGKVRLQNQLLSDICKPTKMKINSIESGINILRDRLRHKKALVVVDGVDKSSQLHALVGSRDWFGKGSIVIITTRDRHLLRESNCVVHLVKNLDERESIELFSWHAFRQKSPKEDFIELSRRVVAYSGGLPLALKVFGSYLFARETEEWESVLERIKKIPLKKIQKKLKTSFDSLSDLSDKEIFLDISCFFIGMDKDDVTQILNGCRFFAKTGIKNLEERSLVTIDENNKLGMHNLLRDMGREIIREESRTLGKRSRLWFHKDAQAVLLKRRSHVYKLDDHDKYVAISLFGKQITQLHTSISAGNKRY 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4093g00063 998 ProSiteProfiles TIR domain profile. 446 613 IPR000157 GO:0007165
Pral4093g00063 998 SMART AAA_5 645 783 IPR003593 GO:0016887
Pral4093g00063 998 SMART AAA_5 144 296 IPR003593 GO:0016887
Pral4093g00063 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 374 IPR027417 -
Pral4093g00063 998 Gene3D - 1 110 IPR035897 -
Pral4093g00063 998 ProSiteProfiles TIR domain profile. 1 112 IPR000157 GO:0007165
Pral4093g00063 998 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 448 958 IPR044974 GO:0006952
Pral4093g00063 998 SUPERFAMILY "Winged helix" DNA-binding domain 852 958 IPR036390 -
Pral4093g00063 998 Pfam NB-ARC domain 629 865 IPR002182 GO:0043531
Pral4093g00063 998 Pfam NB-ARC domain 128 340 IPR002182 GO:0043531
Pral4093g00063 998 SUPERFAMILY Toll/Interleukin receptor TIR domain 439 589 IPR035897 -
Pral4093g00063 998 SMART till_3 447 587 IPR000157 GO:0007165
Pral4093g00063 998 Pfam TIR domain 2 122 IPR000157 GO:0007165
Pral4093g00063 998 Pfam TIR domain 447 612 IPR000157 GO:0007165
Pral4093g00063 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 877 IPR027417 -
Pral4093g00063 998 SUPERFAMILY "Winged helix" DNA-binding domain 353 437 IPR036390 -
Pral4093g00063 998 Gene3D - 444 614 IPR035897 -
Pral4093g00063 998 PRINTS Disease resistance protein signature 648 663 - -
Pral4093g00063 998 PRINTS Disease resistance protein signature 817 831 - -
Pral4093g00063 998 PRINTS Disease resistance protein signature 725 739 - -
Pral4093g00063 998 FunFam Disease resistance protein (TIR-NBS-LRR class) 444 615 - -
Pral4093g00063 998 Gene3D - 281 365 IPR042197 -
Pral4093g00063 998 Gene3D - 782 866 IPR042197 -
Pral4093g00063 998 Gene3D - 111 274 IPR027417 -
Pral4093g00063 998 Gene3D - 615 781 IPR027417 -
Pral4093g00063 998 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 86 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4093g00063 Pral-Chr4093 1378183 1382590 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4093g00063 625 949 WRKY Transcription Factor Family AT5G45050 37.160 4.43e-59 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4093g00063 - - pcin:129287786 1135.17